Factsheet for Zm00001d053041_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013380_P001
Zm00001d018112_P004
Zm00001d023775_P001
Zm00001d033843_P007
Zm00001d034054_P002
Zm00001d037200_P004
Zm00001d038093_P007
Zm00001d044869_P001
Zm00001d052198_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Zm00001d038093_P007	AT1G17760.1	12379796
AT1G71800.1	Zm00001d038093_P007	AT1G17760.1	18479511
AT1G71800.1	Zm00001d018112_P004	AT5G10350.1	18479511
AT1G71800.1	Zm00001d023775_P001	AT5G10350.1	18479511
AT1G71800.1	Zm00001d037200_P004	AT5G10350.1	18479511
AT1G71800.1	Zm00001d044869_P001	AT5G10350.1	18479511
AT1G71800.1	Zm00001d052198_P002	AT5G10350.1	18479511
AT1G71800.1	Zm00001d013380_P001	AT5G58040.1	18479511
AT1G71800.1	Zm00001d033843_P007	AT5G58040.1	18479511
AT1G71800.1	Zm00001d034054_P002	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27890	Sorghum	cytosol	78.9	93.88
Zm00001d004779_P001	Maize	nucleus	76.33	90.63
TraesCS4B01G094500.1	Wheat	nucleus	66.55	79.18
TraesCS4D01G091300.1	Wheat	nucleus	65.87	78.37
Os11t0176100-01	Rice	nucleus	63.64	74.95
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	65.18	71.43
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	21.78	56.44
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	27.79	53.82
GSMUA_Achr10P...	Banana	nucleus	34.31	51.68
Solyc02g069160.2.1	Tomato	nucleus	36.71	42.04
KRH35025	Soybean	nucleus	39.28	42.02
KRG91748	Soybean	nucleus	39.28	41.49
PGSC0003DMT400026767	Potato	nucleus	36.19	41.45
AT1G71800.1	Thale cress	nucleus	32.25	40.78
CDX68301	Canola	cytosol, nucleus, plastid	32.08	40.65
CDY03684	Canola	nucleus	31.05	40.13
Bra007985.1-P	Field mustard	nucleus	31.05	40.13
CDY36682	Canola	cytosol, nucleus, plastid	31.56	40.0
Bra003913.1-P	Field mustard	plastid	31.73	37.99
VIT_18s0001g01800.t01	Wine grape	nucleus	34.82	37.25
CDY37934	Canola	nucleus	31.05	32.21
PGSC0003DMT400033572	Potato	plastid	22.13	31.77
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	9.95	26.85
Zm00001d024806_P001	Maize	cytosol	4.12	7.1

Protein Annotations

Gene3D:1.10.20.70	EntrezGene:100304208	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	UniProt:A0A1D6QLN5	ProteinID:AQK58603.1
InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge	InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0031124	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192	InterPro:L27_dom	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF14304	PFAM:PF14327	PFscan:PS50102	PFscan:PS51022	PANTHER:PTHR23139
PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00084393EA
EnsemblPlantsGene:Zm00001d053041	EnsemblPlants:Zm00001d053041_P002	EnsemblPlants:Zm00001d053041_T002	SEG:seg	:	:

Description

Cleavage stimulating factor 64

Coordinates

chr4:+:210317942..210328393

Molecular Weight (calculated)

62772.8 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.342

Length

583 amino acids

Sequence
(BLAST)

001: MAAAPAGAQN RCVFVGNIPY DATEEQLVQI CEEVGPVVSF RLVIDKETGK PKGYGFCEYK DEETALSARR NLQGYEINGR QLRVDFAESG RNTDRNREKV
101: DNPQNYCRRA FPTTLEFSVN MRSCIVFVPV NNNSCAFSDH PVSPVAISYK HVCGRGGPGM ASNVDSQKRL AGTSVVGETN FHQPVGLPPA IHAASVMAGV
201: LGGAQTANVQ NGLPVQYGLG NDPLTHYLAR MSRHQLHEVM AELKFLTTQN KEHSKTLLQG IPQLPKALFQ EFPFDRKVDR LRIGCRTDGS AHGTSSMAEQ
301: AQIMLGMVTP QMMQMAKSQQ PLGSLAQSSS HLNEPYPQPE PDAMVPVVSR PSSLPTNVLP NPVILQEQTA AIHSFPQHQH ASQPQVKMFP HGQPSGITAQ
401: SPMLHQPLGG SSSVPIQSLV TSVGLTSQVQ PPFVPEHPGP PVMPTSVQQL PLTHPHLALV AAAPETLPNE IRVADQASHL TEFTHPSKLR KLEDGTSVPG
501: MVNSSHAIYT APLQAVGPSG PSGSYSAGAG SLQQPGNEGQ ITPDVESALL QQVLQLTPEQ LSSLPPEQQQ QVIELQKMLS AGK

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.