Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30711 | Sorghum | nucleus | 84.47 | 41.04 |
| Os02t0757900-02 | Rice | nucleus | 82.52 | 39.35 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 78.64 | 38.57 |
| CDY37814 | Canola | nucleus | 56.31 | 37.18 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 78.64 | 36.49 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 76.7 | 36.41 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 66.99 | 33.99 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 78.64 | 32.93 |
| Zm00001d052198_P002 | Maize | nucleus | 83.5 | 32.33 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 63.11 | 30.09 |
| Zm00001d018112_P004 | Maize | nucleus | 82.52 | 29.82 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 62.14 | 29.63 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 61.16 | 29.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.28 | 28.37 |
| Solyc11g009090.1.1 | Tomato | nucleus | 60.19 | 28.31 |
| AT5G10350.1 | Thale cress | nucleus | 59.22 | 28.11 |
| KRH59303 | Soybean | nucleus | 58.25 | 27.91 |
| PGSC0003DMT400043273 | Potato | nucleus | 58.25 | 27.78 |
| PGSC0003DMT400041675 | Potato | nucleus | 58.25 | 27.52 |
| AT5G65260.1 | Thale cress | nucleus | 58.25 | 27.27 |
| CDY08805 | Canola | nucleus, plasma membrane | 58.25 | 27.27 |
| Bra024372.1-P | Field mustard | nucleus | 58.25 | 27.27 |
| CDY33970 | Canola | nucleus | 55.34 | 27.01 |
| CDY55162 | Canola | nucleus | 57.28 | 26.82 |
| KRH43152 | Soybean | nucleus | 56.31 | 26.61 |
| Zm00001d044869_P001 | Maize | nucleus | 62.14 | 23.44 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 33.98 | 16.51 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 6.8 | 5.74 |
| Solyc03g094090.2.1 | Tomato | nucleus | 4.85 | 4.76 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 3.88 | 4.17 |
| Zm00001d031422_P006 | Maize | nucleus | 22.33 | 3.31 |
| Zm00001d052888_P004 | Maize | nucleus | 22.33 | 3.31 |
| Zm00001d025673_P005 | Maize | nucleus | 22.33 | 3.26 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 2.91 | 2.94 |
| Zm00001d003329_P003 | Maize | nucleus | 23.3 | 2.94 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 2.91 | 2.94 |
Protein Annotations
| EnsemblPlants:Zm00001d023775_P001 | EnsemblPlants:Zm00001d023775_T001 | EnsemblPlantsGene:Zm00001d023775 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 |
| ProteinID:AQK39998.1 | SEG:seg | SUPFAM:SSF54928 | UniParc:UPI000842832F | UniProt:A0A1D6IVH0 | MapMan:16.2.1.1.2 |
Description
Polyadenylate-binding protein 3
Coordinates
chr10:+:19782704..19783902
Molecular Weight (calculated)
12214.6 Da
IEP (calculated)
9.849
GRAVY (calculated)
-0.864
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLYTIYNQT KHGCFAYVEF LEQEAVQEAI QEALNLNESE LHGRQIKVAP KRTNVPGMKQ RPPRGYNPYH GYPYRSYGAP YFPPYGYGRA PTFRRPMRYR
101: PYF
101: PYF
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.