CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88655
CDX95960
CDY04265
CDY07357
CDY08805
CDY11833
CDY31306
CDY33554
CDY33952
CDY33970
CDY37814
CDY43886
CDY55162
CDY65811
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65260.1	CDX95960	AT1G69120.1	11439126
AT5G65260.1	CDY04265	AT1G69120.1	11439126
AT5G65260.1	CDY07357	AT1G69120.1	11439126
AT5G65260.1	CDY33554	AT1G69120.1	11439126
AT5G65260.1	CDY65811	AT1G69120.1	11439126
AT5G65260.1	CDX88655	AT5G58040.1	18479511
AT5G65260.1	CDY11833	AT5G58040.1	18479511
AT5G65260.1	CDY43886	AT5G58040.1	18479511
AT5G65260.1	CDY70580	AT5G58040.1	18479511
AT5G65260.1	CDY08805	AT5G65260.1	18479511
AT5G65260.1	CDY31306	AT5G65260.1	18479511
AT5G65260.1	CDY33952	AT5G65260.1	18479511
AT5G65260.1	CDY33970	AT5G65260.1	18479511
AT5G65260.1	CDY37814	AT5G65260.1	18479511
AT5G65260.1	CDY55162	AT5G65260.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	42.45	88.24
CDY33970	Canola	nucleus	74.06	74.41
CDY08805	Canola	nucleus, plasma membrane	70.28	67.73
CDY55162	Canola	nucleus	69.81	67.27
AT5G65260.1	Thale cress	nucleus	69.34	66.82
CDY37814	Canola	nucleus	49.06	66.67
KRH59303	Soybean	nucleus	66.04	65.12
KRH43152	Soybean	nucleus	66.51	64.68
GSMUA_Achr6P10340_001	Banana	nucleus	64.62	63.43
GSMUA_Achr2P22250_001	Banana	nucleus	64.62	63.43
EER88092	Sorghum	nucleus	59.43	62.07
GSMUA_Achr3P21300_001	Banana	nucleus	63.21	62.04
PGSC0003DMT400041675	Potato	nucleus	63.68	61.93
Zm00001d037200_P004	Maize	extracellular, nucleus	58.49	61.08
PGSC0003DMT400043273	Potato	nucleus	61.79	60.65
KXG30711	Sorghum	nucleus	59.91	59.91
TraesCS6A01G316300.1	Wheat	nucleus	58.96	59.52
TraesCS7B01G083600.1	Wheat	nucleus	58.49	59.33
Os06t0219600-01	Rice	nucleus	57.08	59.31
Os02t0757900-02	Rice	nucleus	59.91	58.8
HORVU6Hr1G077700.12	Barley	nucleus	58.49	57.14
TraesCS7A01G177900.1	Wheat	nucleus	58.49	53.91
TraesCS7D01G179700.1	Wheat	nucleus	58.49	53.91
GSMUA_AchrUn_...	Banana	nucleus	50.94	51.92
CDY38851	Canola	nucleus	54.72	51.56
CDY32641	Canola	nucleus	54.72	51.56
CDY05837	Canola	nucleus	54.25	50.66
TraesCS6B01G346800.2	Wheat	nucleus	58.49	50.41
CDX71690	Canola	nucleus	53.77	50.22
TraesCS6D01G295600.1	Wheat	nucleus	52.36	50.0
CDX91567	Canola	nucleus	53.77	50.0
CDY16338	Canola	nucleus	53.77	49.35
Zm00001d052198_P002	Maize	nucleus	58.96	46.99
Zm00001d044869_P001	Maize	nucleus	58.96	45.79
Zm00001d018112_P004	Maize	nucleus	59.91	44.56
Zm00001d023775_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	16.51	33.98
CDX73810	Canola	nucleus	25.0	8.72
CDY00789	Canola	nucleus	24.06	8.5
CDY52667	Canola	nucleus	23.11	8.17
CDY50537	Canola	nucleus	23.11	8.06

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	GO:A0A078H8S1	UniProt:A0A078H8S1	EnsemblPlants:CDY33952	ProteinID:CDY33952
ProteinID:CDY33952.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00055783001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI0004EF300F	SEG:seg

Description

BnaC02g43850DBnaC02g43850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8S1]

Coordinates

chrLK032325:-:37745..39590

Molecular Weight (calculated)

23378.8 Da

IEP (calculated)

4.087

GRAVY (calculated)

-0.230

Length

212 amino acids

Sequence
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMDMTGADD DAAKELDEMK RRLKEIEDEA AALREMQAKV EKDMGPQDPA TIASDQAGKE EVDARSVFVG NVDYACTPEE
101: VQQHFQSCGT VHRVTILTDK FGQPKGFAYV EFVEAEAIQD ALQLNESELH GRQLKVLHKM ETTNPRILIA DKLGIALPQF ILDLNGESGG LLLLFTVGLC
201: ILLPLVVASI YL

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.