Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33970 | Canola | nucleus | 97.44 | 72.04 |
| CDY08805 | Canola | nucleus, plasma membrane | 95.51 | 67.73 |
| CDY55162 | Canola | nucleus | 94.87 | 67.27 |
| AT5G65260.1 | Thale cress | nucleus | 92.31 | 65.45 |
| KRH59303 | Soybean | nucleus | 85.9 | 62.33 |
| KRH43152 | Soybean | nucleus | 85.26 | 61.01 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 81.41 | 58.8 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 81.41 | 58.8 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 80.77 | 58.33 |
| PGSC0003DMT400041675 | Potato | nucleus | 81.41 | 58.26 |
| PGSC0003DMT400043273 | Potato | nucleus | 80.13 | 57.87 |
| EER88092 | Sorghum | nucleus | 75.0 | 57.64 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 74.36 | 57.14 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 37.18 | 56.31 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 74.36 | 55.5 |
| Os06t0219600-01 | Rice | nucleus | 70.51 | 53.92 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 71.15 | 52.86 |
| KXG30711 | Sorghum | nucleus | 71.15 | 52.36 |
| Os02t0757900-02 | Rice | nucleus | 72.44 | 52.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 69.23 | 51.92 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 69.87 | 50.23 |
| CDY05837 | Canola | nucleus | 73.08 | 50.22 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 71.15 | 50.0 |
| CDX71690 | Canola | nucleus | 72.44 | 49.78 |
| CDY38851 | Canola | nucleus | 71.15 | 49.33 |
| CDY32641 | Canola | nucleus | 71.15 | 49.33 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 66.67 | 49.06 |
| CDX91567 | Canola | nucleus | 71.15 | 48.68 |
| CDY16338 | Canola | nucleus | 71.15 | 48.05 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 69.23 | 46.96 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 69.23 | 46.96 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 71.15 | 45.12 |
| Zm00001d044869_P001 | Maize | nucleus | 74.36 | 42.49 |
| Zm00001d052198_P002 | Maize | nucleus | 71.15 | 41.73 |
| Zm00001d018112_P004 | Maize | nucleus | 71.15 | 38.95 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 23.72 | 36.27 |
| CDX73810 | Canola | nucleus | 28.21 | 7.24 |
| CDY00789 | Canola | nucleus | 26.92 | 7.0 |
| CDY52667 | Canola | nucleus | 25.64 | 6.67 |
| CDY50537 | Canola | nucleus | 25.64 | 6.58 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | GO:A0A078HKH6 | UniProt:A0A078HKH6 | EnsemblPlants:CDY37814 | ProteinID:CDY37814 |
| ProteinID:CDY37814.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00064756001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE5082 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng04750DBnaAnng04750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKH6]
Coordinates
chrLK032409:-:31900..33519
Molecular Weight (calculated)
17968.6 Da
IEP (calculated)
9.510
GRAVY (calculated)
-0.671
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAKVEKDMG PQDPATMAAD QAGKEEVDAR SVFVGNVDYA CTPEEVQQHF QSCGTVHRVT ILTDKFGQPK GFAYVEFVEA EAIQEALLLN ESELHGRQLK
101: VLPKRTNVPG LKQHRGRRFN PYMGFRRPFM SPYMYSPYGY GKVPRFRRPM RYMPYQ
101: VLPKRTNVPG LKQHRGRRFN PYMGFRRPFM SPYMYSPYGY GKVPRFRRPM RYMPYQ
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.