Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08805 | Canola | nucleus, plasma membrane | 95.0 | 95.0 |
| CDY55162 | Canola | nucleus | 94.55 | 94.55 |
| Bra024372.1-P | Field mustard | nucleus | 94.55 | 94.55 |
| CDY37814 | Canola | nucleus | 65.45 | 92.31 |
| CDY33970 | Canola | nucleus | 88.18 | 91.94 |
| AT5G10350.1 | Thale cress | nucleus | 84.55 | 85.71 |
| KRH59303 | Soybean | nucleus | 82.27 | 84.19 |
| KRH43152 | Soybean | nucleus | 81.82 | 82.57 |
| PGSC0003DMT400041675 | Potato | nucleus | 80.91 | 81.65 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 37.73 | 81.37 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 37.73 | 81.37 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 79.55 | 81.02 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 79.09 | 80.56 |
| PGSC0003DMT400043273 | Potato | nucleus | 78.64 | 80.09 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 78.64 | 80.09 |
| EER88092 | Sorghum | nucleus | 71.82 | 77.83 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 70.91 | 76.85 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 70.0 | 73.68 |
| KXG30711 | Sorghum | nucleus | 70.91 | 73.58 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 69.55 | 72.86 |
| Os06t0219600-01 | Rice | nucleus | 67.27 | 72.55 |
| Os02t0757900-02 | Rice | nucleus | 70.0 | 71.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.36 | 70.19 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 68.64 | 69.59 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 66.82 | 69.34 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 65.91 | 63.04 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 65.91 | 63.04 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 62.73 | 62.16 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 68.64 | 61.38 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 27.27 | 58.25 |
| Zm00001d052198_P002 | Maize | nucleus | 70.0 | 57.89 |
| Zm00001d044869_P001 | Maize | nucleus | 70.0 | 56.41 |
| AT5G51120.2 | Thale cress | nucleus | 66.82 | 55.47 |
| Zm00001d018112_P004 | Maize | nucleus | 70.91 | 54.74 |
| Solyc03g094090.2.1 | Tomato | nucleus | 25.0 | 52.38 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 22.73 | 52.08 |
| AT3G12640.3 | Thale cress | nucleus | 25.45 | 8.46 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | EntrezGene:836651 | ProteinID:AED98030.1 | EMBL:AF386984 | ArrayExpress:AT5G65260 |
| EnsemblPlantsGene:AT5G65260 | RefSeq:AT5G65260 | TAIR:AT5G65260 | RefSeq:AT5G65260-TAIR-G | EnsemblPlants:AT5G65260.1 | TAIR:AT5G65260.1 |
| Unigene:At.24028 | ProteinID:BAB11662.1 | EMBL:BT000018 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0016607 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_201329.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 |
| PANTHER:PTHR43987 | PANTHER:PTHR43987:SF1 | UniProt:Q9FJN9 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00000AC64D | SEG:seg | : | : | : |
Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
Coordinates
chr5:-:26080222..26083066
Molecular Weight (calculated)
25251.9 Da
IEP (calculated)
4.711
GRAVY (calculated)
-0.761
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.