Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88092 | Sorghum | nucleus | 70.33 | 94.58 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 69.96 | 94.09 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 65.57 | 85.65 |
| Os06t0219600-01 | Rice | nucleus | 62.27 | 83.33 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 67.4 | 80.0 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 67.03 | 79.57 |
| KRH59303 | Soybean | nucleus | 58.97 | 74.88 |
| CDY37814 | Canola | nucleus | 42.49 | 74.36 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 57.88 | 73.15 |
| CDY33970 | Canola | nucleus | 56.04 | 72.51 |
| KRH43152 | Soybean | nucleus | 57.88 | 72.48 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 55.68 | 70.37 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 55.68 | 70.37 |
| AT5G65260.1 | Thale cress | nucleus | 56.41 | 70.0 |
| Solyc11g009090.1.1 | Tomato | nucleus | 56.04 | 69.86 |
| PGSC0003DMT400041675 | Potato | nucleus | 55.68 | 69.72 |
| AT5G10350.1 | Thale cress | nucleus | 55.31 | 69.59 |
| Bra024372.1-P | Field mustard | nucleus | 56.04 | 69.55 |
| CDY08805 | Canola | nucleus, plasma membrane | 56.04 | 69.55 |
| CDY55162 | Canola | nucleus | 55.68 | 69.09 |
| PGSC0003DMT400043273 | Potato | nucleus | 53.11 | 67.13 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 23.44 | 62.14 |
| Zm00001d052198_P002 | Maize | nucleus | 59.71 | 61.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.52 | 61.06 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 22.71 | 60.78 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 22.71 | 60.78 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 45.79 | 58.96 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 25.64 | 57.38 |
| Zm00001d018112_P004 | Maize | nucleus | 59.34 | 56.84 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 15.75 | 44.79 |
| Solyc03g094090.2.1 | Tomato | nucleus | 15.75 | 40.95 |
| Zm00001d031422_P006 | Maize | nucleus | 22.71 | 8.93 |
| Zm00001d025673_P005 | Maize | nucleus | 23.08 | 8.92 |
| Zm00001d052888_P004 | Maize | nucleus | 22.71 | 8.92 |
| Zm00001d003329_P003 | Maize | nucleus | 23.81 | 7.97 |
Protein Annotations
| EntrezGene:100283584 | MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6NRY6 | ProteinID:AQL01044.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000842475C | EnsemblPlantsGene:Zm00001d044869 | EnsemblPlants:Zm00001d044869_P001 |
| EnsemblPlants:Zm00001d044869_T001 | SEG:seg | : | : | : | : |
Description
Polyadenylate-binding protein 3
Coordinates
chr9:-:5913634..5918967
Molecular Weight (calculated)
30702.9 Da
IEP (calculated)
5.133
GRAVY (calculated)
-0.883
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEEHEVYG QEIPVDGEDV DMSAGDDATK VPLDAHSHPT PLPRRPNPSG GTDPSHAQLQ ELDEMKRRLK EMEEEAAALR EMQAKVAKDM QDNTWIITGH
101: LVLVPPLSKE SKTPTGTLVI SKREEANPSI SEMDGNGDPN ATTSENKEEM DSRSVFVGNV DYACTPEEVQ QHFNSCGTVN RVTILTDKFG QPKGFAYVEF
201: VEVEAVQEAI KLNESELHGR QLKVAPKRTN VPGMKQPRGR GFNPYRPYGY SPYGYGYGYG RFPRFRRPRR PYF
101: LVLVPPLSKE SKTPTGTLVI SKREEANPSI SEMDGNGDPN ATTSENKEEM DSRSVFVGNV DYACTPEEVQ QHFNSCGTVN RVTILTDKFG QPKGFAYVEF
201: VEVEAVQEAI KLNESELHGR QLKVAPKRTN VPGMKQPRGR GFNPYRPYGY SPYGYGYGYG RFPRFRRPRR PYF
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.