Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g094090.2.1 | |
| Solyc05g056620.1.1 | |
| Solyc07g005320.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65260.1 | Solyc05g056620.1.1 | AT1G69120.1 | 11439126 |
| AT5G65260.1 | Solyc07g005320.2.1 | AT5G58040.1 | 18479511 |
| AT5G65260.1 | Solyc03g094090.2.1 | AT5G65260.1 | 18479511 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 55.24 | 60.42 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 45.71 | 47.06 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 45.71 | 47.06 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 51.43 | 25.0 |
| AT5G65260.1 | Thale cress | nucleus | 52.38 | 25.0 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 49.52 | 24.07 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 48.57 | 23.61 |
| Solyc11g009090.1.1 | Tomato | nucleus | 46.67 | 22.37 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 42.86 | 22.17 |
| EER88092 | Sorghum | nucleus | 42.86 | 22.17 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 42.86 | 21.43 |
| Os02t0757900-02 | Rice | nucleus | 43.81 | 21.3 |
| KXG30711 | Sorghum | nucleus | 42.86 | 21.23 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 41.9 | 21.05 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 41.9 | 20.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.0 | 20.19 |
| Os06t0219600-01 | Rice | nucleus | 39.05 | 20.1 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 41.9 | 19.13 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 41.9 | 19.13 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 42.86 | 18.29 |
| Solyc10g047360.1.1 | Tomato | nucleus | 33.33 | 17.86 |
| Zm00001d052198_P002 | Maize | nucleus | 41.9 | 16.54 |
| Zm00001d018112_P004 | Maize | nucleus | 42.86 | 15.79 |
| Zm00001d044869_P001 | Maize | nucleus | 40.95 | 15.75 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 32.38 | 15.32 |
| Solyc03g094040.2.1 | Tomato | mitochondrion | 11.43 | 7.84 |
| Solyc03g094080.2.1 | Tomato | nucleus | 9.52 | 6.29 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 4.76 | 4.85 |
| Solyc03g094060.2.1 | Tomato | cytosol | 9.52 | 3.39 |
| Solyc01g086980.2.1 | Tomato | nucleus | 19.05 | 2.98 |
Protein Annotations
| EnsemblPlants:Solyc03g094090.2.1 | EnsemblPlantsGene:Solyc03g094090.2 | ncoils:Coil | PANTHER:PTHR43987 | PANTHER:PTHR43987:SF3 | UniParc:UPI0002767675 |
| UniProt:K4BIT4 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:55803984..55804912
Molecular Weight (calculated)
11975.7 Da
IEP (calculated)
3.940
GRAVY (calculated)
-0.894
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQDNEYDD EHEHEVYGGE IPDEEGEMDA EYDTSAAAES EDDPNAKELE NMKKRLKEIE DEAGALREMQ AKVEKEMGSA QGFTHLAVFF KYFALLTCLE
101: TPILT
101: TPILT
001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ
Arabidopsis Description
PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.