CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88092
EER90862
EER95753
EER97510
KXG23502
KXG27890
KXG30711
KXG37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10350.1	KXG27890	AT1G71800.1	18479511
AT5G10350.1	EER88092	AT5G10350.1	18479511
AT5G10350.1	KXG30711	AT5G10350.1	18479511
AT5G10350.1	KXG37677	AT5G58040.1	18479511
AT5G10350.1	EER88092	AT5G65260.1	18479511
AT5G10350.1	KXG30711	AT5G65260.1	18479511
AT5G65260.1	EER90862	AT1G69120.1	11439126
AT5G65260.1	EER95753	AT1G69120.1	11439126
AT5G65260.1	EER97510	AT1G69120.1	11439126
AT5G65260.1	KXG23502	AT1G69120.1	11439126
AT5G65260.1	EER88092	AT5G10350.1	18479511
AT5G65260.1	KXG30711	AT5G10350.1	18479511
AT5G65260.1	KXG37677	AT5G58040.1	18479511
AT5G65260.1	EER88092	AT5G65260.1	18479511
AT5G65260.1	KXG30711	AT5G65260.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037200_P004	Maize	extracellular, nucleus	98.52	98.52
TraesCS7B01G083600.1	Wheat	nucleus	91.63	89.0
Os06t0219600-01	Rice	nucleus	87.68	87.25
KXG30711	Sorghum	nucleus	84.24	80.66
TraesCS7D01G179700.1	Wheat	nucleus	86.7	76.52
TraesCS7A01G177900.1	Wheat	nucleus	86.7	76.52
GSMUA_Achr2P22250_001	Banana	nucleus	80.79	75.93
KRH59303	Soybean	nucleus	79.8	75.35
CDY37814	Canola	nucleus	57.64	75.0
GSMUA_Achr3P21300_001	Banana	nucleus	77.83	73.15
CDY33970	Canola	nucleus	75.86	72.99
KRH43152	Soybean	nucleus	78.33	72.94
GSMUA_Achr6P10340_001	Banana	nucleus	77.34	72.69
PGSC0003DMT400041675	Potato	nucleus	77.34	72.02
AT5G65260.1	Thale cress	nucleus	77.83	71.82
Solyc11g009090.1.1	Tomato	nucleus	77.34	71.69
CDY08805	Canola	nucleus, plasma membrane	77.34	71.36
Bra024372.1-P	Field mustard	nucleus	77.34	71.36
CDY55162	Canola	nucleus	76.85	70.91
AT5G10350.1	Thale cress	nucleus	75.37	70.51
Zm00001d044869_P001	Maize	nucleus	94.58	70.33
PGSC0003DMT400043273	Potato	nucleus	72.41	68.06
GSMUA_AchrUn_...	Banana	nucleus	64.04	62.5
CDY31306	Canola	mitochondrion, nucleus, plasma membrane	30.54	60.78
Bra031905.1-P	Field mustard	mitochondrion, nucleus, plasma membrane	30.54	60.78
CDY33952	Canola	cytosol, golgi, nucleus	62.07	59.43
VIT_00s0625g00040.t01	Wine grape	cytosol	35.47	59.02
KXG38899	Sorghum	nucleus	48.28	51.04
VIT_16s0039g02780.t01	Wine grape	nucleus, plasma membrane, plastid	21.67	45.83
Solyc03g094090.2.1	Tomato	nucleus	22.17	42.86
KXG26527	Sorghum	nucleus	29.56	8.44
EES15409	Sorghum	nucleus	27.59	8.07

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	EntrezGene:8065487	UniProt:C5Z6X3	ncoils:Coil	EnsemblPlants:EER88092
ProteinID:EER88092	ProteinID:EER88092.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987
PANTHER:PTHR43987:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3010G088000	SUPFAM:SSF54928
unigene:Sbi.8588	UniParc:UPI0001A8936C	RefSeq:XP_002436725.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:7524691..7528763

Molecular Weight (calculated)

23288.3 Da

IEP (calculated)

5.066

GRAVY (calculated)

-0.929

Length

203 amino acids

Sequence
(BLAST)

001: MEDEEHEVYG QEIPVDGEDV DMAAGDDATK LQELDEMKRR LKEMEEEAAA LREMQAKVAK EMQGVDPNAT TSENKEEMDS RSVFVGNVDY ACTPEEVQQH
101: FNSCGTVNRV TILTDKFGQP KGFAYVEFVE VEAVQEAVKL NESELHGRQL KVAPKRTNVP GMKQPRGRGF NPYHGHPYMR PYGYSPYGYG RFPRFRRPRR
201: PYF

Best Arabidopsis Sequence Match ( AT5G65260.1 )
(BLAST)

001: MEEEEHEVYG GEIPDVGEMD GDMEALNPDL DMAAADDDAV KELDEMKKRL KEMEDEAAAL REMQAKVEKE MGAQDPASIA ANQAGKEEVD ARSVFVGNVD
101: YACTPEEVQQ HFQTCGTVHR VTILTDKFGQ PKGFAYVEFV EVEAVQEALQ LNESELHGRQ LKVLQKRTNV PGLKQFRGRR FNPYMGYRFR RPFMSPYMYS
201: PYGYGKAPRF RRPMRYMPYQ

Arabidopsis Description

PABN2Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.