CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021468	Potato	cytosol, nucleus	34.9	63.21
Solyc03g094040.2.1	Tomato	mitochondrion	43.23	54.25
TraesCS1D01G218400.1	Wheat	nucleus	57.81	54.15
Solyc03g094080.2.1	Tomato	nucleus	43.75	52.83
TraesCS1A01G216200.1	Wheat	nucleus	56.25	52.43
EER88092	Sorghum	nucleus	51.04	48.28
KRG92240	Soybean	nucleus	52.6	47.2
KRH34559	Soybean	nucleus	52.08	46.73
HORVU1Hr1G055400.2	Barley	cytosol, golgi, nucleus	55.73	46.12
KXG30711	Sorghum	nucleus	50.0	45.28
Bra022536.1-P	Field mustard	nucleus	52.08	43.29
CDX91567	Canola	nucleus	51.04	42.98
CDY16338	Canola	nucleus	51.56	42.86
CDY38851	Canola	nucleus	50.0	42.67
CDY32641	Canola	nucleus	50.0	42.67
Bra029187.1-P	Field mustard	nucleus	50.0	42.67
CDY05837	Canola	nucleus	50.0	42.29
Bra035725.1-P	Field mustard	nucleus	50.0	42.29
CDX71690	Canola	nucleus	48.44	40.97
AT5G51120.2	Thale cress	nucleus	50.52	36.6
Solyc03g094060.2.1	Tomato	cytosol	40.1	26.1
EES15409	Sorghum	nucleus	26.04	7.2
KXG26527	Sorghum	nucleus	24.48	6.61

Protein Annotations

MapMan:16.2.1.1.2	Gene3D:3.30.70.330	UniProt:A0A1B6QLU7	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008143	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG38899
ProteinID:KXG38899	ProteinID:KXG38899.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987
PANTHER:PTHR43987:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G294600	SUPFAM:SSF54928
UniParc:UPI00081AB3E7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:57327361..57332412

Molecular Weight (calculated)

21718.4 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.718

Length

192 amino acids

Sequence
(BLAST)

001: MAMTSKRGRS GDETRGSGHR ARIGRIEEGE TDHPSAVELR ASLYTRDQEI EEMRRRLREL EKLEFEIPPA PSHEEESETA VAATTVDKAE VDVRSIYVGN
101: VDYACSPEEV QQHFQFCGTI NRVTILTDSF GQPKGFAYVE FDEVEAVQNA LLLNETELHG RPLKVCPKRT NIPGMKQSRG RHSVYPFYPS YG

Best Arabidopsis Sequence Match ( AT5G51120.1 )
(BLAST)

001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQDPSG GVSAAEKEEV
101: DSRSIYVGNV DYACTPEEVQ QHFQSCGTVN RVTILTDKFG QPKGFAYVEF VEVEAVQNSL ILNESELHGR QIKVSAKRTN VPGMRQFRGR GRPFRPMRGF
201: MPGVPFYPPY AYGRVPRFRR PMRYRPY

Arabidopsis Description

PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.