Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g094040.2.1 | Tomato | mitochondrion | 96.23 | 66.67 |
| PGSC0003DMT400080650 | Potato | nucleus | 74.53 | 40.31 |
| KRG92240 | Soybean | nucleus | 78.3 | 38.78 |
| KRH34559 | Soybean | nucleus | 77.36 | 38.32 |
| PGSC0003DMT400041675 | Potato | nucleus | 72.64 | 35.32 |
| PGSC0003DMT400043273 | Potato | nucleus | 71.7 | 35.19 |
| KXG38899 | Sorghum | nucleus | 63.21 | 34.9 |
| CDY38851 | Canola | nucleus | 73.58 | 34.67 |
| CDY32641 | Canola | nucleus | 73.58 | 34.67 |
| Bra029187.1-P | Field mustard | nucleus | 73.58 | 34.67 |
| CDX91567 | Canola | nucleus | 74.53 | 34.65 |
| CDY16338 | Canola | nucleus | 74.53 | 34.2 |
| Bra022536.1-P | Field mustard | nucleus | 74.53 | 34.2 |
| CDY05837 | Canola | nucleus | 71.7 | 33.48 |
| CDX71690 | Canola | nucleus | 71.7 | 33.48 |
| Bra035725.1-P | Field mustard | nucleus | 71.7 | 33.48 |
| Solyc03g094060.2.1 | Tomato | cytosol | 88.68 | 31.86 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 61.32 | 31.71 |
| TraesCS1A01G216200.1 | Wheat | nucleus | 59.43 | 30.58 |
| AT5G51120.2 | Thale cress | nucleus | 75.47 | 30.19 |
| HORVU1Hr1G055400.2 | Barley | cytosol, golgi, nucleus | 59.43 | 27.16 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021468 | EnsemblPlantsGene:PGSC0003DMG402008332 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43987 | PANTHER:PTHR43987:SF4 | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG402008332 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000296EDDF | UniProt:M1AF62 | MapMan:16.2.1.1.2 | : | : |
Description
Polyadenylate-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402008332]
Coordinates
chr3:-:36801819..36802223
Molecular Weight (calculated)
11906.4 Da
IEP (calculated)
10.396
GRAVY (calculated)
-0.332
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: VDYACLPGEV KQHFQACGTV NRVTILTDKL GQPKGFAYVE FFEIEAVQNA LLLNESELHG RKLKVSAKRT NVPGMKQFRG RRFNPYAEFR PRRAFVPGAP
101: AIPPFG
101: AIPPFG
001: MPVHDEQEHE VYGGEIPEEE EGEMDTEEYE EHGGEEGAAA GDEELEPGSS SRDLEDMKKR IKEIEEEAGA LREMQAKAEK DMGASQGLKL VLLIMILLWV
101: YILESFSESM NLSRNLLEFE YEKEIINSGV SAAEKEEVDS RSIYVGNVDY ACTPEEVQQH FQSCGTVNRV TILTDKFGQP KGFAYVEFVE VEAVQNSLIL
201: NESELHGRQI KVSAKRTNVP GMRQFRGRGR PFRPMRGFMP GVPFYPPYAY GRVPRFRRPM RYRPY
101: YILESFSESM NLSRNLLEFE YEKEIINSGV SAAEKEEVDS RSIYVGNVDY ACTPEEVQQH FQSCGTVNRV TILTDKFGQP KGFAYVEFVE VEAVQNSLIL
201: NESELHGRQI KVSAKRTNVP GMRQFRGRGR PFRPMRGFMP GVPFYPPYAY GRVPRFRRPM RYRPY
Arabidopsis Description
PABN1Polyadenylate-binding protein 1 [Source:UniProtKB/TrEMBL;Acc:F4KBV3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.