Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g009090.1.1 | Tomato | nucleus | 98.17 | 97.72 |
| PGSC0003DMT400043273 | Potato | nucleus | 84.4 | 85.19 |
| KRH59303 | Soybean | nucleus | 81.19 | 82.33 |
| CDY37814 | Canola | nucleus | 58.26 | 81.41 |
| AT5G65260.1 | Thale cress | nucleus | 81.65 | 80.91 |
| CDY33970 | Canola | nucleus | 77.52 | 80.09 |
| KRH43152 | Soybean | nucleus | 79.82 | 79.82 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 78.9 | 79.63 |
| CDY08805 | Canola | nucleus, plasma membrane | 80.28 | 79.55 |
| CDY55162 | Canola | nucleus | 79.82 | 79.09 |
| Bra024372.1-P | Field mustard | nucleus | 79.82 | 79.09 |
| AT5G10350.1 | Thale cress | nucleus | 77.52 | 77.88 |
| EER88092 | Sorghum | nucleus | 72.02 | 77.34 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 76.61 | 77.31 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 75.69 | 76.39 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 71.1 | 76.35 |
| PGSC0003DMT400080650 | Potato | nucleus | 67.43 | 75.0 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 72.02 | 74.76 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 70.18 | 73.21 |
| KXG30711 | Sorghum | nucleus | 71.1 | 73.11 |
| PGSC0003DMT400021468 | Potato | cytosol, nucleus | 35.32 | 72.64 |
| Os06t0219600-01 | Rice | nucleus | 67.89 | 72.55 |
| Os02t0757900-02 | Rice | nucleus | 71.56 | 72.22 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 70.64 | 70.97 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 33.03 | 70.59 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 33.03 | 70.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 63.76 | 66.83 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 35.78 | 63.93 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 61.93 | 63.68 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 71.1 | 63.01 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 66.06 | 62.61 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 66.06 | 62.61 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 63.3 | 62.16 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 27.52 | 58.25 |
| Zm00001d052198_P002 | Maize | nucleus | 70.18 | 57.52 |
| Zm00001d044869_P001 | Maize | nucleus | 69.72 | 55.68 |
| Zm00001d018112_P004 | Maize | nucleus | 71.1 | 54.39 |
Protein Annotations
| EntrezGene:102591574 | MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1BBS3 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400016158 | PGSC:PGSC0003DMG400016158 | EnsemblPlants:PGSC0003DMT400041675 | PFscan:PS50102 | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002955A17 |
| RefSeq:XP_006353217.1 | SEG:seg | : | : | : | : |
Description
Poly-A binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016158]
Coordinates
chr11:+:2764369..2770064
Molecular Weight (calculated)
24865.2 Da
IEP (calculated)
4.778
GRAVY (calculated)
-0.825
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEEHEVYG GEIPIEGDME PHGADVDMAT ADDDAVKELD EMKKRLKEME DEAAALREMQ AKVEKEMGSV QDPASTAASQ ENREEVDSRS IFVGNVDYAC
101: TPEEVQQHFQ ACGTVNRVTI LTDKFGQPKG FAYVEFIEQE AIQEALQLNE SELHGRQLKV VPKRTNVPGM KQFRPGRFNP YLGGHRSRRP YAAPYFYSPY
201: GYGKVPRFRR PGRFMPYY
101: TPEEVQQHFQ ACGTVNRVTI LTDKFGQPKG FAYVEFIEQE AIQEALQLNE SELHGRQLKV VPKRTNVPGM KQFRPGRFNP YLGGHRSRRP YAAPYFYSPY
201: GYGKVPRFRR PGRFMPYY
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.