Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G65260.1 | Thale cress | nucleus | 85.71 | 84.55 |
| KRH59303 | Soybean | nucleus | 81.57 | 82.33 |
| KRH43152 | Soybean | nucleus | 80.18 | 79.82 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 78.8 | 79.17 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 78.34 | 78.7 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 77.42 | 77.78 |
| PGSC0003DMT400041675 | Potato | nucleus | 77.88 | 77.52 |
| PGSC0003DMT400043273 | Potato | nucleus | 76.5 | 76.85 |
| EER88092 | Sorghum | nucleus | 70.51 | 75.37 |
| Zm00001d037200_P004 | Maize | extracellular, nucleus | 69.59 | 74.38 |
| KXG30711 | Sorghum | nucleus | 72.35 | 74.06 |
| TraesCS6A01G316300.1 | Wheat | nucleus | 70.97 | 73.33 |
| Os06t0219600-01 | Rice | nucleus | 68.2 | 72.55 |
| TraesCS7B01G083600.1 | Wheat | nucleus | 69.12 | 71.77 |
| Os02t0757900-02 | Rice | nucleus | 71.43 | 71.76 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 70.05 | 70.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.52 | 67.31 |
| TraesCS6D01G295600.1 | Wheat | nucleus | 64.06 | 62.61 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 70.97 | 62.6 |
| TraesCS7A01G177900.1 | Wheat | nucleus | 64.98 | 61.3 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 64.98 | 61.3 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 28.11 | 59.22 |
| Zm00001d052198_P002 | Maize | nucleus | 71.43 | 58.27 |
| Zm00001d044869_P001 | Maize | nucleus | 69.59 | 55.31 |
| Zm00001d018112_P004 | Maize | nucleus | 72.35 | 55.09 |
| AT5G51120.2 | Thale cress | nucleus | 64.98 | 53.21 |
| AT3G12640.3 | Thale cress | nucleus | 23.96 | 7.85 |
Protein Annotations
| MapMan:16.2.1.1.2 | Gene3D:3.30.70.330 | EntrezGene:830899 | UniProt:A0A178UEY3 | ProteinID:AED91528.1 | ProteinID:AED91529.1 |
| ProteinID:AED91530.2 | ProteinID:ANM69018.1 | ProteinID:ANM69019.1 | ProteinID:ANM69020.1 | ArrayExpress:AT5G10350 | EnsemblPlantsGene:AT5G10350 |
| RefSeq:AT5G10350 | TAIR:AT5G10350 | RefSeq:AT5G10350-TAIR-G | EnsemblPlants:AT5G10350.1 | TAIR:AT5G10350.1 | EMBL:BT003893 |
| EMBL:BT005003 | ProteinID:CAB89408.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0008143 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016607 | GO:GO:0043621 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001318527.1 |
| RefSeq:NP_001330728.1 | RefSeq:NP_001330729.1 | RefSeq:NP_001330730.1 | RefSeq:NP_196597.1 | RefSeq:NP_850803.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAO91727.1 | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43987 |
| PANTHER:PTHR43987:SF1 | UniProt:Q9LX90 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000000C1C8 | SEG:seg | : | : | : | : |
Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
Coordinates
chr5:-:3255236..3257811
Molecular Weight (calculated)
24805.2 Da
IEP (calculated)
4.575
GRAVY (calculated)
-0.766
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.