Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G316300.1 | Wheat | nucleus | 82.43 | 87.14 |
| HORVU6Hr1G077700.12 | Barley | nucleus | 81.98 | 83.87 |
| KXG30711 | Sorghum | nucleus | 79.73 | 83.49 |
| Os02t0757900-02 | Rice | nucleus | 79.28 | 81.48 |
| Zm00001d023775_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 36.49 | 78.64 |
| TraesCS6B01G346800.2 | Wheat | nucleus | 82.88 | 74.8 |
| CDY37814 | Canola | nucleus | 50.0 | 71.15 |
| GSMUA_Achr6P10340_001 | Banana | nucleus | 64.86 | 66.67 |
| KRH59303 | Soybean | nucleus | 64.41 | 66.51 |
| Zm00001d052198_P002 | Maize | nucleus | 79.28 | 66.17 |
| GSMUA_Achr3P21300_001 | Banana | nucleus | 63.51 | 65.28 |
| GSMUA_Achr2P22250_001 | Banana | nucleus | 63.51 | 65.28 |
| KRH43152 | Soybean | nucleus | 63.96 | 65.14 |
| AT5G10350.1 | Thale cress | nucleus | 62.61 | 64.06 |
| CDY33970 | Canola | nucleus | 60.81 | 63.98 |
| Solyc11g009090.1.1 | Tomato | nucleus | 62.61 | 63.47 |
| PGSC0003DMT400041675 | Potato | nucleus | 62.16 | 63.3 |
| AT5G65260.1 | Thale cress | nucleus | 62.16 | 62.73 |
| CDY08805 | Canola | nucleus, plasma membrane | 61.71 | 62.27 |
| Bra024372.1-P | Field mustard | nucleus | 61.71 | 62.27 |
| PGSC0003DMT400043273 | Potato | nucleus | 60.36 | 62.04 |
| CDY55162 | Canola | nucleus | 61.26 | 61.82 |
| Zm00001d018112_P004 | Maize | nucleus | 79.28 | 61.75 |
| TraesCS7D01G179700.1 | Wheat | nucleus | 61.26 | 59.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.95 | 58.65 |
| CDY33952 | Canola | cytosol, golgi, nucleus | 50.0 | 52.36 |
| TraesCS1D01G218400.1 | Wheat | nucleus | 46.4 | 50.24 |
| Bra031905.1-P | Field mustard | mitochondrion, nucleus, plasma membrane | 20.72 | 45.1 |
| CDY31306 | Canola | mitochondrion, nucleus, plasma membrane | 20.72 | 45.1 |
| VIT_00s0625g00040.t01 | Wine grape | cytosol | 23.42 | 42.62 |
| Solyc03g094090.2.1 | Tomato | nucleus | 15.32 | 32.38 |
| VIT_16s0039g02780.t01 | Wine grape | nucleus, plasma membrane, plastid | 13.06 | 30.21 |
| TraesCS2D01G332600.2 | Wheat | nucleus | 25.68 | 8.24 |
| TraesCS7D01G243800.1 | Wheat | nucleus | 25.68 | 8.19 |
| TraesCS2D01G271900.2 | Wheat | nucleus | 20.72 | 7.14 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G295600.1 | EnsemblPlantsGene:TraesCS6D01G295600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR43987 | PANTHER:PTHR43987:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | TIGR:cd12306 | MapMan:16.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:406335601..406340246
Molecular Weight (calculated)
25234.8 Da
IEP (calculated)
9.177
GRAVY (calculated)
-0.844
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPRSCAPN SPEGTGMRQA LFPAMPGPTY QAQAQWASDR ALSRYLQELD EMKRRLKEME EEAAALRDMQ AKVAKEMQGG DANASTAEAK EQVDARSVYV
101: GNVDYACTPE EVQQHFQACG TVNRVTILTD KFGQPKGFAY VEFLEQEAVQ EALNLNESEL HGRQIKVSPK RTNVPGMKQR PPRGFNPYHA YPYRSYGAPY
201: FPPYGYGRVP RFRRPTRYRP YF
101: GNVDYACTPE EVQQHFQACG TVNRVTILTD KFGQPKGFAY VEFLEQEAVQ EALNLNESEL HGRQIKVSPK RTNVPGMKQR PPRGFNPYHA YPYRSYGAPY
201: FPPYGYGRVP RFRRPTRYRP YF
001: MEEEEHEVYG GEIPEVGDTD VPDPDIDMSA ADEDAVTELA EMKRRLKEME EEAAALREMQ AKVEKEMGAT QDPASMAANQ EGKEEVDARS VYVGNVDYAC
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
101: TPEEVQLHFQ TCGTVNRVTI LMDKFGQPKG FAYVEFVEVE AVQEALQLNE SELHGRQLKV SPKRTNVPGM KQYHPGRFNP SMGYRFRRPF VPPYFYSPYG
201: YGKAPRFRRP MRYMPYQ
Arabidopsis Description
PABN3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.