Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G009390.7 | Barley | nucleus | 94.35 | 83.71 |
| TraesCS4A01G258200.3 | Wheat | nucleus | 95.59 | 83.63 |
| TraesCS4D01G056600.1 | Wheat | nucleus | 95.23 | 83.26 |
| KXG37677 | Sorghum | nucleus | 63.9 | 56.21 |
| Zm00001d033843_P007 | Maize | nucleus | 62.31 | 55.55 |
| CDY55018 | Canola | mitochondrion | 5.38 | 55.45 |
| Zm00001d013380_P001 | Maize | nucleus | 61.25 | 54.39 |
| PGSC0003DMT400008250 | Potato | nucleus | 4.32 | 41.53 |
| GSMUA_Achr7P27630_001 | Banana | nucleus | 41.39 | 34.77 |
| GSMUA_Achr4P14570_001 | Banana | nucleus | 37.95 | 30.69 |
| CDY43886 | Canola | nucleus | 31.16 | 30.4 |
| KRH37905 | Soybean | nucleus | 35.3 | 30.35 |
| CDX88655 | Canola | nucleus | 27.89 | 30.21 |
| Bra006786.1-P | Field mustard | nucleus | 27.89 | 30.18 |
| KRH12930 | Soybean | nucleus | 34.69 | 30.14 |
| Bra002677.1-P | Field mustard | nucleus | 30.98 | 29.95 |
| VIT_11s0037g00130.t01 | Wine grape | nucleus | 37.95 | 29.17 |
| CDY70580 | Canola | cytosol, nucleus, plastid | 14.83 | 28.77 |
| AT5G58040.1 | Thale cress | nucleus | 30.1 | 28.51 |
| Solyc07g005320.2.1 | Tomato | nucleus | 34.16 | 28.04 |
| CDY11833 | Canola | nucleus | 26.21 | 27.89 |
| TraesCS4B01G182200.1 | Wheat | nucleus | 10.94 | 11.83 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G056200.1 | EnsemblPlantsGene:TraesCS4B01G056200 | InterPro:Fip1 | PANTHER:PTHR36884 | PFAM:PF05182 | SEG:seg |
| MapMan:16.2.1.2.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:45503787..45513672
Molecular Weight (calculated)
127655.0 Da
IEP (calculated)
6.532
GRAVY (calculated)
-1.491
Length
1133 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDDDEFDDE DGEDLLIVAD GLHIPGMEEQ EWVEDGTAAG PEGERKEGGE PGKTGPMPGG RIGYSGGGPG FNPQHHSMFK YVRPGAPTGG APGAPGQFRP
0101: PGPQGPFSGR GRGDWRPGAG RGMNKGFHSG YGMTPWGGAG RGFGGGLDFT LPPHKIIFDI DIDTTFEEKP WKYSGAEISD FFNFGLDEEK WKDYCKQLDQ
0201: SRLESTMQSR IRVYESGRSE QDYDPDLPPE LAAAAGHHDI SADNRNKVDN GHADFSAQGR VPTSNRPAVM MGRPIQVETG YGERFPSADT RSRMRDSDSV
0301: IEIVCEAPAD DPIVADSSVD QSEKDSQGGK KSNGVEESEV YTPEKTNNSS YNSTLGKAEH TRRLPVSSEG DMLTSDVHGR SPPNYKIRGS PSRGVRLKGR
0401: SQGVNPSREA ESSNEVPRKT TSSKRRRDTP RDSKPVDDSE TKDGLKGSPT VADETTDKLS TEDQFADNDD RLALVDSAEA DADDAISEPH MASDTNEGDH
0501: EDHSSKRQKI ISKVEQPPRH NNSSDQVDLK TLNSENSRGV RSGSSKDHQK RLESGEEVLQ DRRSRRVNDA RRHHDGEERD PRRKDVSARD IKPEIERTHL
0601: ASRGRDDIHH PYGNRDQDVR GKSFDRVRET EILQRREDSM HNRRGKEEDL RLNYNAEVGA RQRNKLRPID RNDRDEDPHP RKLLDDGDWR GSRQRERGDM
0701: VLNSRESLDD SHIKRKKDEE NTRRMKPENE DAVHGYRGRD DPNRRKRERD DGIDQKRRDD GVRMREKADD RSFVKNKEDN LRQREKDDKQ RPKHESTLLL
0801: QREEGRGTGR GGRVMDEKIV SGGRKKDESR SALLSKETQE RSKQNEPGRR GQGAEENNTQ NKGRADVRPR DDNPNNNERN SRQDKINKTH DNNRVSSSSD
0901: ARQANRDKPR ESTRKGRGSV PNEQDLHRSS KRRREDHESH RSGKVEVKGG REQENGRDHA TSSKTSKNPQ RHDSFVKQGE EEAMSDDENT DDSRRGRSKL
1001: ERWTSHKEID YSTIDNETTH AFPSIKADVQ PPTADASGKS DVPAIVVSSD MKNSGDNGQA SEMTAEERDR HLDTVERLKR RSERFKLPMP GEKEVPQNKK
1101: VDAEVQTPQN ESPAADVEVK PERPARKRRW AGS
0101: PGPQGPFSGR GRGDWRPGAG RGMNKGFHSG YGMTPWGGAG RGFGGGLDFT LPPHKIIFDI DIDTTFEEKP WKYSGAEISD FFNFGLDEEK WKDYCKQLDQ
0201: SRLESTMQSR IRVYESGRSE QDYDPDLPPE LAAAAGHHDI SADNRNKVDN GHADFSAQGR VPTSNRPAVM MGRPIQVETG YGERFPSADT RSRMRDSDSV
0301: IEIVCEAPAD DPIVADSSVD QSEKDSQGGK KSNGVEESEV YTPEKTNNSS YNSTLGKAEH TRRLPVSSEG DMLTSDVHGR SPPNYKIRGS PSRGVRLKGR
0401: SQGVNPSREA ESSNEVPRKT TSSKRRRDTP RDSKPVDDSE TKDGLKGSPT VADETTDKLS TEDQFADNDD RLALVDSAEA DADDAISEPH MASDTNEGDH
0501: EDHSSKRQKI ISKVEQPPRH NNSSDQVDLK TLNSENSRGV RSGSSKDHQK RLESGEEVLQ DRRSRRVNDA RRHHDGEERD PRRKDVSARD IKPEIERTHL
0601: ASRGRDDIHH PYGNRDQDVR GKSFDRVRET EILQRREDSM HNRRGKEEDL RLNYNAEVGA RQRNKLRPID RNDRDEDPHP RKLLDDGDWR GSRQRERGDM
0701: VLNSRESLDD SHIKRKKDEE NTRRMKPENE DAVHGYRGRD DPNRRKRERD DGIDQKRRDD GVRMREKADD RSFVKNKEDN LRQREKDDKQ RPKHESTLLL
0801: QREEGRGTGR GGRVMDEKIV SGGRKKDESR SALLSKETQE RSKQNEPGRR GQGAEENNTQ NKGRADVRPR DDNPNNNERN SRQDKINKTH DNNRVSSSSD
0901: ARQANRDKPR ESTRKGRGSV PNEQDLHRSS KRRREDHESH RSGKVEVKGG REQENGRDHA TSSKTSKNPQ RHDSFVKQGE EEAMSDDENT DDSRRGRSKL
1001: ERWTSHKEID YSTIDNETTH AFPSIKADVQ PPTADASGKS DVPAIVVSSD MKNSGDNGQA SEMTAEERDR HLDTVERLKR RSERFKLPMP GEKEVPQNKK
1101: VDAEVQTPQN ESPAADVEVK PERPARKRRW AGS
0001: MEEDDEFGDL YSDVLQPFQP PVVLPPPPPL PHRSIDLNLR SQDQDVSEPN SAPISRVSDN DAVKLSTQDA TRQAIVDGGG DDKDMSFDIE EPDADSTPTI
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
0101: PGLFVTGALP GLATDRGVSQ VTTRIEQQVG GGGDGGYGGQ GEGDDWDSDS EDDLQIVLND SSRNVMIGGA DRRSRMGDNE DDDDEDDEDP LVIVADTDPN
0201: QPMEEQMWGE DGLQGIEGDG KDGGEAGKGS GPGGATGPPK AGYSSHGYHP FHSQFKYVRP GAAPIPGGAA SVGGPSSGQV RPPANLGPMA GRGRGDWRPL
0301: GMRNASAAQK GFHQPWGSNT AGRGLDFTLP SHKTIFEVDI DSFEEKPWRY PGVEMTDYFN FGLNEESWKD YCKQLDQHRI QTTMQSRIRV YESGRTDQGY
0401: DPDLPPELAA ATGAQGVPVD SSNLVKPDSV QGDSAKVPAN VRPTLPPGRP IPVETGSGER LPSIDTRAPR MRDLDAIIEI VCQDSHEDEP SGENGTDQAD
0501: SSLPGENVPV ETSYVNNKRP DTESAEHSPA QDEPHKNLLK KQDDEISRST DSGQSFRSSS PVGDRGTRSS SVDREDVGGE AGKDAEMGEE LKMSFTSPQS
0601: AVQEDDGGES KTERSSESSK ARSGSHRDFQ QEEDVIQDKH SSRPANNRKQ YDNNAPHQSR KNQDRGKEME RTRAASKGGR ENSNPHMELD STYIYSIASR
0701: EDFDKRKERD VDGAVWRRKE DDPYSRRGGD EGSRKRDRED DPGFRQRGKM RENEIRSKDD QVPSRKHMDD AGMRNIYEPD DHINKRRKDE EYLRRSRPEK
0801: NEISYGQRES MSRVKRERDD RLEHQKRDVQ HKIRDDFDDH GSLRQRDDIY MQRDGNERLR ERDVLDKLKL PHEDGISARG RERQVAVRGH RGSEDRSSRM
0901: KDEYKASDKE HVTKDTLRHA KQTKRRDYPG EESSSHHRGH EDFSARTDNI VNNEKKPRQE RTGAKIDKFI DTLDGQRLQD RKHKDSRRKI KEQREGTESL
1001: SKQGEQNGSS VVTGSKGTND ARNCRSEIPH QPNTAKRHKE NASSGDEIHD SKRGRTKLER WASHKEREDA VSAKSSSISS KLEEKENNTN GRLSEPVHGS
1101: IGKSRDVTEE KIGHDLADTK DGSEKGPGDR HLDTVEKLKK RSERFKLPMP TEKDTTGVKK MESETLPSAK IEGPVDSEVK AERPARKRRW TSS
Arabidopsis Description
FIPS5FIP1[V]-like protein [Source:UniProtKB/Swiss-Prot;Acc:F4KDH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.