Factsheet for TraesCS1B01G366600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G258200.3
TraesCS4B01G056200.1
TraesCS4D01G056600.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	TraesCS7A01G461800.1	AT1G30460.1	18479511
AT4G25550.1	TraesCS7B01G363200.2	AT1G30460.1	18479511
AT4G25550.1	TraesCS7D01G450100.1	AT1G30460.1	18479511
AT4G25550.1	TraesCS4A01G258200.3	AT5G58040.1	18479511
AT4G25550.1	TraesCS4B01G056200.1	AT5G58040.1	18479511
AT4G25550.1	TraesCS4D01G056600.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G355400.1	Wheat	cytosol	99.01	99.01
TraesCS1A01G355100.1	Wheat	cytosol	99.01	99.01
TraesCS2B01G608100.1	Wheat	cytosol	96.55	96.55
PGSC0003DMT400084196	Potato	peroxisome	30.54	92.54
GSMUA_Achr1P17490_001	Banana	unclear	90.64	92.0
GSMUA_Achr2P03900_001	Banana	cytosol	89.66	91.0
KRH35335	Soybean	cytosol	32.51	90.41
GSMUA_Achr9P20560_001	Banana	cytosol	77.83	89.27
PGSC0003DMT400037077	Potato	cytosol	27.09	88.71
Solyc03g025880.2.1	Tomato	nucleus	86.21	87.5
HORVU1Hr1G081030.2	Barley	cytosol	45.32	86.79
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	85.22	86.5
KRG91493	Soybean	endoplasmic reticulum, nucleus	85.22	86.5
CDY50198	Canola	cytosol	84.24	85.5
Bra019155.1-P	Field mustard	cytosol	84.24	85.5
CDX92717	Canola	cytosol	83.74	85.0
Solyc01g009620.2.1	Tomato	nucleus	83.74	85.0
Solyc01g009630.2.1	Tomato	nucleus	83.74	85.0
CDY54086	Canola	cytosol	83.25	84.5
CDY52363	Canola	cytosol	83.25	84.5
PGSC0003DMT400037076	Potato	cytosol, plastid	47.29	84.21
AT4G25550.1	Thale cress	cytosol	82.76	84.0
CDX89414	Canola	cytosol	82.27	83.5
Bra013899.1-P	Field mustard	cytosol	82.27	83.5
VIT_15s0046g03350.t01	Wine grape	cytosol	87.19	75.32
CDX94441	Canola	cytosol	81.77	70.34
HORVU0Hr1G001450.1	Barley	plastid	56.16	62.98
Bra010457.1-P	Field mustard	cytosol	82.27	42.49
TraesCS7B01G229300.1	Wheat	cytosol	48.77	40.41

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PIRSF:PIRSF017888
PANTHER:PTHR13047	SUPFAM:SSF55811	EnsemblPlantsGene:TraesCS1B01G366600	EnsemblPlants:TraesCS1B01G366600.1	:	:

Description

No Description!

Coordinates

chr1B:+:597547847..597551581

Molecular Weight (calculated)

23213.4 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.262

Length

203 amino acids

Sequence
(BLAST)

001: MVGTPSSPVV NVYPLANYTF GTKEAKMEKD TSVADRLARM KVNYMKEGMR TSVEAILLVQ EHNHPHILLL QIGNTFCKLP GGRLKPGESE IEGLKRKLCS
101: KLAVNSPSFP PNWQVGECVA EWWRPNFETV MYPYCPPHIT KPKECKKLFI VHLTEREYFA VPRNLKLLAV PLFELYDNVQ RYGPVISTIP QQLSRFQFNM
201: VSS

Best Arabidopsis Sequence Match ( AT4G29820.1 )
(BLAST)

001: MGEEARALDM EEISDNTTRR NDVVHDLMVD LYPLSSYYFG SKEALRVKDE IISDRVIRLK SNYAAHGLRT CVEAVLLVEL FKHPHVLLLQ YRNSIFKLPG
101: GRLRPGESDI EGLKRKLASK LSVNENVGVS GYEVGECIGM WWRPNFETLM YPFLPPNIKH PKECTKLFLV RLPVHQQFVV PKNFKLLAVP LCQLHENEKT
201: YGPIMSQIPK LLSKFSFNMM EI

Arabidopsis Description

CFIS1Pre-mRNA cleavage factor Im 25 kDa subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.