Factsheet for Solyc03g025880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021760.2.1
Solyc02g070240.2.1
Solyc07g005320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT4G25550.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT4G25550.1	Solyc07g005320.2.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037076	Potato	cytosol, plastid	55.0	96.49
PGSC0003DMT400037077	Potato	cytosol	29.5	95.16
KRH35335	Soybean	cytosol	34.5	94.52
KRG91493	Soybean	endoplasmic reticulum, nucleus	91.5	91.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	90.5	90.5
Solyc01g009630.2.1	Tomato	nucleus	90.0	90.0
Solyc01g009620.2.1	Tomato	nucleus	89.5	89.5
TraesCS2D01G592500.2	Wheat	cytosol	89.0	87.68
TraesCS2B01G608100.1	Wheat	cytosol	89.0	87.68
TraesCS2A01G580600.1	Wheat	nucleus	89.0	87.68
HORVU2Hr1G124110.1	Barley	cytosol	89.0	87.68
CDX92717	Canola	cytosol	87.0	87.0
CDY50198	Canola	cytosol	86.5	86.5
Bra019155.1-P	Field mustard	cytosol	86.5	86.5
TraesCS1D01G355400.1	Wheat	cytosol	87.5	86.21
TraesCS1B01G366600.1	Wheat	cytosol	87.5	86.21
TraesCS1A01G355100.1	Wheat	cytosol	87.5	86.21
Bra013899.1-P	Field mustard	cytosol	85.0	85.0
AT4G25550.1	Thale cress	cytosol	85.0	85.0
CDX89414	Canola	cytosol	85.0	85.0
CDY54086	Canola	cytosol	84.5	84.5
CDY52363	Canola	cytosol	84.5	84.5
HORVU1Hr1G081030.2	Barley	cytosol	41.5	78.3
CDX94441	Canola	cytosol	84.0	71.19
GSMUA_AchrUn_...	Banana	plastid	26.0	58.43
HORVU0Hr1G001450.1	Barley	plastid	47.5	52.49
Solyc07g041000.2.1	Tomato	cytosol	49.5	49.01
Bra010457.1-P	Field mustard	cytosol	84.5	43.0

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	InterPro:Cleav_polyA_spec_factor_su5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:K4BF61	PFAM:PF13869	PIRSF:PIRSF017888	PANTHER:PTHR13047	EnsemblPlantsGene:Solyc03g025880.2
EnsemblPlants:Solyc03g025880.2.1	UniParc:UPI0002768E9A	:	:	:	:

Description

Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:Projected from Arabidopsis thaliana (AT4G25550) UniProtKB/Swiss-Prot;Acc:Q8GXS3]

Coordinates

chr3:-:3277535..3289189

Molecular Weight (calculated)

22919.0 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.321

Length

200 amino acids

Sequence
(BLAST)

001: MVTTSVVNTY PLSSYTFGTK ETKMEKDTSV ADRLARMKVN YTKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEIEG LKRKLSSKLA
101: ANSPGIQPNW QVGECVAIWW RPNFETIMYP YCPPHITKPK ECKKLFVVHL SEREYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFQFNMIHP

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.