CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11760
KRH12930
KRH36762
KRH37905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	KRH11760	AT1G30460.1	18479511
AT4G25550.1	KRH36762	AT1G30460.1	18479511
AT4G25550.1	KRH12930	AT5G58040.1	18479511
AT4G25550.1	KRH37905	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037077	Potato	cytosol	76.71	90.32
HORVU1Hr1G081030.2	Barley	cytosol	89.04	61.32
KRG91493	Soybean	endoplasmic reticulum, nucleus	98.63	36.0
Solyc03g025880.2.1	Tomato	nucleus	94.52	34.5
Solyc01g009630.2.1	Tomato	nucleus	93.15	34.0
Solyc01g009620.2.1	Tomato	nucleus	91.78	33.5
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	91.78	33.5
TraesCS1A01G355100.1	Wheat	cytosol	90.41	32.51
TraesCS1B01G366600.1	Wheat	cytosol	90.41	32.51
TraesCS1D01G355400.1	Wheat	cytosol	90.41	32.51
TraesCS2A01G580600.1	Wheat	nucleus	90.41	32.51
TraesCS2B01G608100.1	Wheat	cytosol	90.41	32.51
HORVU2Hr1G124110.1	Barley	cytosol	90.41	32.51
TraesCS2D01G592500.2	Wheat	cytosol	90.41	32.51
CDY54086	Canola	cytosol	89.04	32.5
CDY52363	Canola	cytosol	89.04	32.5
CDY50198	Canola	cytosol	89.04	32.5
CDX92717	Canola	cytosol	89.04	32.5
CDX89414	Canola	cytosol	89.04	32.5
Bra019155.1-P	Field mustard	cytosol	89.04	32.5
Bra013899.1-P	Field mustard	cytosol	89.04	32.5
AT4G25550.1	Thale cress	cytosol	89.04	32.5
CDX94441	Canola	cytosol	89.04	27.54
Bra010457.1-P	Field mustard	cytosol	89.04	16.54
KRH37445	Soybean	nucleus	45.21	14.67
KRH12461	Soybean	plastid	36.99	9.12
GSMUA_AchrUn_...	Banana	plastid	4.11	3.37
PGSC0003DMT400084196	Potato	peroxisome	2.74	2.99
PGSC0003DMT400037076	Potato	cytosol, plastid	1.37	0.88
HORVU0Hr1G001450.1	Barley	plastid	1.37	0.55

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EMBL:ACUP02006664	InterPro:Cleav_polyA_spec_factor_su5	EnsemblPlantsGene:GLYMA_10G236700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	UniProt:K7LL37	EnsemblPlants:KRH35335	ProteinID:KRH35335
ProteinID:KRH35335.1	PFAM:PF13869	PANTHER:PTHR13047	PANTHER:PTHR13047:SF0	UniParc:UPI0002964CB9	:

Description

hypothetical protein

Coordinates

chr10:-:46557062..46557706

Molecular Weight (calculated)

8672.8 Da

IEP (calculated)

9.763

GRAVY (calculated)

-0.189

Length

73 amino acids

Sequence
(BLAST)

1: MYPYCPPHIT KPKECKKLFL VHLSEREYFA VPKNLKLLAV PLFELYDNVQ RYGPVISTIP QQLSRFQFKM ITN

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.