Factsheet for Bra010457.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra006786.1-P
Bra010767.1-P
Bra014881.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25550.1	Bra010767.1-P	AT1G30460.1	18479511
AT4G25550.1	Bra014881.1-P	AT1G30460.1	18479511
AT4G25550.1	Bra002677.1-P	AT5G58040.1	18479511
AT4G25550.1	Bra006786.1-P	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52363	Canola	cytosol	50.38	99.0
CDY54086	Canola	cytosol	50.38	99.0
Bra013899.1-P	Field mustard	cytosol	49.62	97.5
AT4G25550.1	Thale cress	cytosol	49.11	96.5
Bra019155.1-P	Field mustard	cytosol	48.85	96.0
KRH35335	Soybean	cytosol	16.54	89.04
KRG91493	Soybean	endoplasmic reticulum, nucleus	45.04	88.5
PGSC0003DMT400084196	Potato	peroxisome	15.01	88.06
VIT_16s0050g00030.t01	Wine grape	cytosol, plastid	43.51	85.5
PGSC0003DMT400037077	Potato	cytosol	13.49	85.48
Solyc01g009630.2.1	Tomato	nucleus	43.26	85.0
Solyc03g025880.2.1	Tomato	nucleus	43.0	84.5
Solyc01g009620.2.1	Tomato	nucleus	42.75	84.0
HORVU2Hr1G124110.1	Barley	cytosol	43.0	83.25
TraesCS2A01G580600.1	Wheat	nucleus	43.0	83.25
TraesCS2B01G608100.1	Wheat	cytosol	43.0	83.25
TraesCS2D01G592500.2	Wheat	cytosol	43.0	83.25
TraesCS1D01G355400.1	Wheat	cytosol	42.49	82.27
TraesCS1A01G355100.1	Wheat	cytosol	42.49	82.27
TraesCS1B01G366600.1	Wheat	cytosol	42.49	82.27
PGSC0003DMT400037076	Potato	cytosol, plastid	23.41	80.7
HORVU1Hr1G081030.2	Barley	cytosol	20.61	76.42
GSMUA_AchrUn_...	Banana	plastid	11.7	51.69
Bra009744.1-P	Field mustard	cytosol, mitochondrion, peroxisome	6.36	51.02
HORVU0Hr1G001450.1	Barley	plastid	22.9	49.72
Bra011138.1-P	Field mustard	cytosol	26.72	47.95

Protein Annotations

MapMan:16.2.1.4.1	Gene3D:3.90.79.10	EnsemblPlantsGene:Bra010457	EnsemblPlants:Bra010457.1	EnsemblPlants:Bra010457.1-P	InterPro:Cleav_polyA_spec_factor_su5
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005849
GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
UniProt:M4D1V7	InterPro:NUDIX_hydrolase-like_dom_sf	PFAM:PF13869	PANTHER:PTHR13047	SUPFAM:SSF55811	UniParc:UPI0002545A37
SEG:seg	:	:	:	:	:

Description

AT4G25550 (E=4e-113) | protein binding

Coordinates

chrA08:-:14610160..14613878

Molecular Weight (calculated)

43929.2 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.623

Length

393 amino acids

Sequence
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV DAILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEVEG LKRKLTSKLG
101: GNSAALVPDW KVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMIKE
201: EEHHEKGAAK VLKKAKEKAK KIKNALTKHG HGHEQELHGG APARGRGHHV SDPVEEEFFP DPMKEEMVPP GKKFFPVVSS SHSTKPSGRV KGAEASISRD
301: GYGNKVISMV TPVYEKVKGT GAIVMKKLPF SSGGTHTERE NKQGQDKGIS AKEYLTKKLR PGEGDKALSE VVTEKLHLGG DKSGSVPVQN RFQ

Best Arabidopsis Sequence Match ( AT4G25550.1 )
(BLAST)

001: MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG
101: GNSAALVPDW TVGECVATWW RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFHFNMISS

Arabidopsis Description

CFIS2Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.