Factsheet for Bra014881.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra004171.1-P
Bra006786.1-P
Bra009712.1-P
Bra010457.1-P
Bra010767.1-P
Bra012994.1-P
Bra013899.1-P
Bra014881.1-P
Bra016588.1-P
Bra019155.1-P
Bra022557.1-P
Bra026637.1-P
Bra029526.1-P
Bra029588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	Bra016588.1-P	AT1G17760.1	18479511
AT1G30460.1	Bra010767.1-P	AT1G30460.1	18479511
AT1G30460.1	Bra014881.1-P	AT1G30460.1	18479511
AT1G30460.1	Bra004171.1-P	AT1G66500.1	18479511
AT1G30460.1	Bra026637.1-P	AT2G01730.1	16897494
AT1G30460.1	Bra029588.1-P	AT3G06560.1	16897494
AT1G30460.1	Bra029588.1-P	AT3G06560.1	18479511
AT1G30460.1	Bra029526.1-P	AT4G04885.1	18479511
AT1G30460.1	Bra010457.1-P	AT4G25550.1	18479511
AT1G30460.1	Bra013899.1-P	AT4G25550.1	18479511
AT1G30460.1	Bra019155.1-P	AT4G25550.1	18479511
AT1G30460.1	Bra009712.1-P	AT5G23880.1	16897494
AT1G30460.1	Bra009712.1-P	AT5G23880.1	18479511
AT1G30460.1	Bra022557.1-P	AT5G51660.1	16897494
AT1G30460.1	Bra022557.1-P	AT5G51660.1	18479511
AT1G30460.1	Bra002677.1-P	AT5G58040.1	16282318
AT1G30460.1	Bra006786.1-P	AT5G58040.1	16282318
AT1G30460.1	Bra002677.1-P	AT5G58040.1	18479511
AT1G30460.1	Bra006786.1-P	AT5G58040.1	18479511
AT1G30460.1	Bra012994.1-P	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77591	Canola	nucleus	83.28	81.18
AT1G30460.1	Thale cress	nucleus	85.17	78.29
Bra010767.1-P	Field mustard	nucleus	81.9	75.4
VIT_10s0003g04600.t01	Wine grape	nucleus	62.93	54.23
KRH36762	Soybean	nucleus	63.45	54.04
KRH11760	Soybean	nucleus	63.97	53.69
Solyc02g070240.2.1	Tomato	nucleus	61.21	52.91
Solyc02g021760.2.1	Tomato	nucleus	61.72	51.96
GSMUA_Achr9P30440_001	Banana	nucleus	57.93	51.14
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	55.86	50.62
EER88812	Sorghum	cytosol, nucleus, peroxisome	55.34	49.77
GSMUA_Achr6P19820_001	Banana	nucleus	59.14	49.57
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	54.31	48.69
HORVU7Hr1G106340.5	Barley	cytosol	53.97	48.23
TraesCS7D01G450100.1	Wheat	nucleus	53.97	48.15
TraesCS7A01G461800.1	Wheat	nucleus	53.79	48.0
TraesCS7B01G363200.2	Wheat	nucleus	53.79	47.78
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	55.34	46.79
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	19.48	42.48
Zm00001d014379_P001	Maize	nucleus	17.07	40.24
Zm00001d036595_P001	Maize	nucleus	17.07	39.44
Bra033125.1-P	Field mustard	nucleus	15.69	26.22

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	EnsemblPlantsGene:Bra014881	EnsemblPlants:Bra014881.1	EnsemblPlants:Bra014881.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR007275	UniProt:M4DEG0	PFAM:PF04146	PFscan:PS50103	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF59	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0002540F47	InterPro:YTH_domain	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

AT1G30460 (E=3e-141) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding

Coordinates

chrA07:+:5626333..5630736

Molecular Weight (calculated)

64201.0 Da

IEP (calculated)

6.213

GRAVY (calculated)

-0.909

Length

580 amino acids

Sequence
(BLAST)

001: MEDADGLSFD FEGGLDSAPT QPTASVPVPP PENSSSAAVN LTPNYDHSSA TVPGAGRGRS FRQTVCRHWL RGLCMKAEAC GFLHQYDKAR MPICRFFRLH
101: GECREHDCVY KHTNEDIKEC NMYKLGFCPN GSECRYRHAK LPGPPPPVEE TQGQLQDSGN LQQQQPQQTQ HQVSQTQTPN PAEQTSHAHP LPRGVNRYFV
201: VKSCNLENFE LSVQRGVWAT QRSNEAKLNE AFDSVANVIL IFSVNRTRHF QGCAKMTSRI GGENWKHEHG TAQFGRNFSV KWLKLCELSF HKTRNLRNPY
301: NENLPVKELE PSVGEELASL LYLEPDSELM AISIAAEAKR EEEKAKGVNP ESRAENSNIV PFEDNEEEEE EEDDSEEEED GMANGPQGRG RGMMWPPQMP
401: LGRGIRPMPG MGGFPLGVMA PADAFPYGPG GCNGMPDPFG MGGPRPFGPY EPRFGGDFRG PVPRMMFPGR PPQQFPHGGY RMMGRGPVMG GMGNAAPRGG
501: GGGRPMYHPP ATTTTSVRPA SSNRRTPERS DDRGVAVDEH TSHEMEQSEG GNSLRNEESG SEDEDEAPRR SRHGEGKKRR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.