Factsheet for Bra016588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002677.1-P
Bra003913.1-P
Bra004171.1-P
Bra006786.1-P
Bra007985.1-P
Bra010767.1-P
Bra014881.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	Bra010767.1-P	AT1G30460.1	18479511
AT1G17760.1	Bra014881.1-P	AT1G30460.1	18479511
AT1G17760.1	Bra010767.1-P	AT1G30460.1	20214900
AT1G17760.1	Bra014881.1-P	AT1G30460.1	20214900
AT1G17760.1	Bra004171.1-P	AT1G66500.1	18479511
AT1G17760.1	Bra003913.1-P	AT1G71800.1	12379796
AT1G17760.1	Bra007985.1-P	AT1G71800.1	12379796
AT1G17760.1	Bra003913.1-P	AT1G71800.1	18479511
AT1G17760.1	Bra007985.1-P	AT1G71800.1	18479511
AT1G17760.1	Bra004171.1-P	AT5G43620.1	18479511
AT1G17760.1	Bra002677.1-P	AT5G58040.1	18479511
AT1G17760.1	Bra006786.1-P	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96753	Canola	nucleus	95.86	95.59
AT1G17760.1	Thale cress	nucleus	88.4	87.19
KRG94131	Soybean	cytosol, nucleus	66.99	65.63
Solyc10g050540.1.1	Tomato	nucleus	63.12	61.67
Os12t0571900-01	Rice	cytosol	59.25	58.69
TraesCS3A01G074000.1	Wheat	nucleus	57.87	57.79
TraesCS3D01G073700.1	Wheat	nucleus	57.87	57.79
GSMUA_Achr9P17150_001	Banana	plastid	62.85	57.74
Zm00001d038093_P007	Maize	nucleus	58.43	56.63
TraesCS3B01G088300.3	Wheat	nucleus	57.87	56.47
KXG22737	Sorghum	cytosol	58.43	56.4
VIT_11s0065g00710.t01	Wine grape	cytosol	68.09	54.48
HORVU3Hr1G013370.4	Barley	plastid	57.87	53.24

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	EnsemblPlantsGene:Bra016588	EnsemblPlants:Bra016588.1	EnsemblPlants:Bra016588.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123
GO:GO:0042868	GO:GO:0045892	GO:GO:0060968	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M4DJB0	PFAM:PF05843	PFAM:PF13428	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR19980	SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00025454D3	SEG:seg	:	:	:

Description

AT1G17760 (E=5e-211) CSTF77, ATCSTF77 | CSTF77; protein binding

Coordinates

chrA08:+:19170312..19175565

Molecular Weight (calculated)

81566.4 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.487

Length

724 amino acids

Sequence
(BLAST)

001: MADKYNVEEA EALAKRALHL PITQATPIYE QLLSLYPTSA RFWKQYVETQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFTLNYIG TDIASGPIWT EYITFLKSLP ALNPHEDMQR KIALRKVYQR AILTPTHHVE QLWKEYENFE NSVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEDIDWNM LAVPPTGSSK EEVQWVAWKK FLTFEKGNPQ RIDAALSTKR IIYVYEQCLM CLYHYPDVWY DYAEWHIKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAYAELE EARGAIQSAK NLYESILGVS TNSLAQIQFL RFLRRAEGVE SARKYFLEAR KSPSCTYHVY IAFATMAFCL DKDPKVGLWS NVSELYADFL
401: TRLNDDRNIR ALFERALSTL PTEESAEVWN RFVQFEQTYG DLASILKVEQ RRKEALFGKG EEGSPALESS LQDVVSRYSY MDLWPCTSNE LDHLSRQELL
501: VKNMNKKVEK TNQPPGSATI GSVASSSKVV YPDTAQMVVH DPAKKSGIEF SSSAKPVAAS ASNTFQSNVT ATATHGSAST FDEIPKTTPP ALLAFLANLP
601: HVDGPTPNVD VVLSICLQSD LPTGQTAKQN FVAKGNVPSQ NDPSGPNRGG SQRLPRDRRA TKRKGSDRQE DDDTASIQSQ PLPTDVFRLR QMRKARGIST
701: SSQTPTGSAS YGSAYSGELS GSTG

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.