Factsheet for GSMUA_Achr9P17150_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P14570_001
GSMUA_Achr6P17820_001
GSMUA_Achr6P18930_001
GSMUA_Achr6P19820_001
GSMUA_Achr7P27630_001
GSMUA_Achr9P30440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	GSMUA_Achr6P19820_001	AT1G30460.1	18479511
AT1G17760.1	GSMUA_Achr9P30440_001	AT1G30460.1	18479511
AT1G17760.1	GSMUA_Achr6P19820_001	AT1G30460.1	20214900
AT1G17760.1	GSMUA_Achr9P30440_001	AT1G30460.1	20214900
AT1G17760.1	GSMUA_Achr6P18930_001	AT1G66500.1	18479511
AT1G17760.1	GSMUA_Achr10P...	AT1G71800.1	12379796
AT1G17760.1	GSMUA_Achr6P17820_001	AT1G71800.1	12379796
AT1G17760.1	GSMUA_Achr10P...	AT1G71800.1	18479511
AT1G17760.1	GSMUA_Achr6P17820_001	AT1G71800.1	18479511
AT1G17760.1	GSMUA_Achr6P18930_001	AT5G43620.1	18479511
AT1G17760.1	GSMUA_Achr4P14570_001	AT5G58040.1	18479511
AT1G17760.1	GSMUA_Achr7P27630_001	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0571900-01	Rice	cytosol	66.75	71.96
KRG94131	Soybean	cytosol, nucleus	65.36	69.69
TraesCS3D01G073700.1	Wheat	nucleus	64.09	69.66
Solyc10g050540.1.1	Tomato	nucleus	65.36	69.5
TraesCS3A01G074000.1	Wheat	nucleus	63.83	69.38
KXG22737	Sorghum	cytosol	65.48	68.8
Zm00001d038093_P007	Maize	nucleus	64.72	68.27
TraesCS3B01G088300.3	Wheat	nucleus	64.09	68.06
CDX96753	Canola	nucleus	59.77	64.88
HORVU3Hr1G013370.4	Barley	plastid	64.47	64.55
AT1G17760.1	Thale cress	nucleus	59.77	64.17
CDX83892	Canola	nucleus	59.9	63.1
Bra016588.1-P	Field mustard	nucleus	57.74	62.85
VIT_11s0065g00710.t01	Wine grape	cytosol	68.53	59.67

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892	GO:GO:0060968
EnsemblPlantsGene:GSMUA_Achr9G17150_001	EnsemblPlants:GSMUA_Achr9P17150_001	EnsemblPlants:GSMUA_Achr9T17150_001	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0U122	PFAM:PF05843	PFAM:PF13428	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR19980	SMART:SM00386	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002949505	SEG:seg	:	:	:

Description

Putative Cleavage stimulation factor subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G17150_001]

Coordinates

chr9:+:11670950..11698673

Molecular Weight (calculated)

88859.8 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.434

Length

788 amino acids

Sequence
(BLAST)

001: MRESSRFLVP PSLRSSISNR ALRLRLVAVG SSKPSPRKGD DNATTDIYNV EAAEILVNEA QALPITEAAP IYEQLLCTFP TAAKYWKQYV EAYMAINNDE
101: VTKQIFSRCL LNCLQISLWR CYISFIKKVN EKKGLEGVEE TKKAFDFMLN YVGYDIASGP VWLEYIAFLK SLPAKTAQEE SHHMTSVRKA YQRAIVTPTH
201: NVEQLWKDYE NFENSVSRTL AKGLLSEYQP KFNSAKAVYR ERKKYVDEID WNMLAVPPTG SYKEEQQCMA WKRLLIFEKG NPQRIDTASA NRRITFTYEQ
301: SLMYLYHYPD LWYDYATWHA NSGSVDSAIK IFQRALKAVP DSELLKYAYA ELEESRGAIQ PAKKIYESLL ASSSNSMSLA HIQFIRFLRR TEGVEAARKY
401: FLDARKSPSC TYHVFVAYAM MVFCVDKDPK AAHNIFEAGL KKFMNEPGYI LEYADFLCRL NDDRNVRALF ERALSSLPPE KSVEIWIRFC QFEQTYGDLT
501: SMIKVEQRKK EALTRSVEEG STVLENTLYD VISRYSFMDL WPCSPKDLDH LARQEWLVKN INRKVDKSNL LHGANITEKG SVGLTTNSKV LLPSAKVVYP
601: DTARMVIYDP RQTLGKRSEA ASTSASGSSL VGSGLKAFDD ILKVISPTLM AFITNMPAVE GPSPDIDVVL SILLQSSIPT GQTGKPATSL QQMPGGPGPT
701: TSDHSGSIKT RMNNGPPHRL PRDGHSGKRK DLDRQEDDES TTVQSRPLPR DVFRLRQMHR SRGRSTSQTG SAASGGSAFS GDQSVSTD

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.