Factsheet for Os12t0571900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0677700-00
Os08t0187700-01
Os11t0176100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	Os06t0677700-00	AT1G30460.1	18479511
AT1G17760.1	Os06t0677700-00	AT1G30460.1	20214900
AT1G17760.1	Os08t0187700-01	AT1G66500.1	18479511
AT1G17760.1	Os11t0176100-01	AT1G71800.1	12379796
AT1G17760.1	Os11t0176100-01	AT1G71800.1	18479511
AT1G17760.1	Os08t0187700-01	AT5G43620.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G073700.1	Wheat	nucleus	81.67	82.34
TraesCS3A01G074000.1	Wheat	nucleus	81.4	82.07
TraesCS3B01G088300.3	Wheat	nucleus	81.94	80.73
KXG22737	Sorghum	cytosol	81.12	79.07
Zm00001d038093_P007	Maize	nucleus	80.44	78.71
HORVU3Hr1G013370.4	Barley	plastid	82.08	76.24
GSMUA_Achr9P17150_001	Banana	plastid	71.96	66.75
KRG94131	Soybean	cytosol, nucleus	66.89	66.17
Solyc10g050540.1.1	Tomato	nucleus	66.62	65.72
CDX96753	Canola	nucleus	60.33	60.74
Bra016588.1-P	Field mustard	nucleus	58.69	59.25
AT1G17760.1	Thale cress	nucleus	58.82	58.58
CDX83892	Canola	nucleus	59.78	58.42
VIT_11s0065g00710.t01	Wine grape	cytosol	67.99	54.92

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	EntrezGene:4352587	ProteinID:ABA99669.1	EMBL:AK102914	ProteinID:BAF30107.1
ProteinID:BAT17746.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006379	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892	GO:GO:0060968
InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlantsGene:Os12g0571900	EnsemblPlants:Os12t0571900-01
PFAM:PF05843	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19980	UniProt:Q2QNB5	SMART:SM00386
SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0000680DAB
RefSeq:XP_015620376.1	SEG:seg	:	:	:	:

Description

Tetratricopeptide-like helical domain containing protein. (Os12t0571900-01)

Coordinates

chr12:+:23545376..23554463

Molecular Weight (calculated)

82768.6 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.456

Length

731 amino acids

Sequence
(BLAST)

001: MDIYNVEAAE ILANEAQLLP IGEAAPIYEK LLSTFPTAAK YWKQYVEAYM SAKDDEATKQ IFSRCLLSCL QINLWRCYIN FIRRVNDKRG SDGLEETKKA
101: FDFMLNYVGN DVASGPVWMD YIAFLKSMPV VTPQEESHRM TTVRKVYQKA ILVPTNHVEQ LWKDYENFEN SVSRTLAKGL LSEYQPKFNS AKAVYRERKK
201: YIDDIDWNML AVPPTGSYKE EQQCMAWKRL LAFEKGNPQR IDATTANRRV TFTFEQCLMY LYHHPDIWYD YAMWHAKNGS VDSAIKIFQR AVKALPDSGV
301: LKYAFAELEE SRGAIQPAKA IYESLIAENA GMTSLAHIQF IRFLRRTEGI EAARKYFLDA RKLPGCTYHV YVAYATMAFC LDKDAKVAQS VFEAGLKRFM
401: HEPGYILEYA DFLCRLNDDR NVRALFERAL SLLPPEESIE VWKRFAQFEQ TYGDLSSMLK VEQRRKEALS RTSEDALSAL ENTLYDVVSR YSYMDLWPCS
501: TKELDYLSRH EWLAKNIANR GDKSVVLTGG ATLGDIRVGS NKKSFPQSSK VVRPEISRMV IYDPRQMKGP DFSTTASGYT KEIDEILKRL SPQMMSFITN
601: LPAIEGPSPD MDIVLSVLMQ STLPVGDKPG SQVPGPATSD LSGPGKSGLN QNGSIHRPPR DGQPTKRKNS ERGRAQEEDD TSTTVQSRAM PRDIFRLRQI
701: QRNRGLGPSQ SGSAALSSGS VFSGDQSASS G

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.