Factsheet for Os11t0176100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0757900-02
Os03t0754900-02
Os06t0219600-01
Os12t0571900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Os12t0571900-01	AT1G17760.1	12379796
AT1G71800.1	Os12t0571900-01	AT1G17760.1	18479511
AT1G71800.1	Os02t0757900-02	AT5G10350.1	18479511
AT1G71800.1	Os06t0219600-01	AT5G10350.1	18479511
AT1G71800.1	Os03t0754900-02	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27890	Sorghum	cytosol	77.58	78.37
TraesCS4D01G091300.1	Wheat	nucleus	77.37	78.16
TraesCS4B01G094500.1	Wheat	nucleus	77.17	77.96
Zm00001d004779_P001	Maize	nucleus	72.93	73.52
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	77.98	72.56
Zm00001d053041_P002	Maize	cytosol	74.95	63.64
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	25.86	56.89
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	33.54	55.15
GSMUA_Achr10P...	Banana	nucleus	42.02	53.75
KRG91748	Soybean	nucleus	46.87	42.03
KRH35025	Soybean	nucleus	45.86	41.65
Solyc02g069160.2.1	Tomato	nucleus	42.63	41.45
AT1G71800.1	Thale cress	nucleus	38.38	41.21
PGSC0003DMT400026767	Potato	nucleus	42.02	40.86
CDX68301	Canola	cytosol, nucleus, plastid	37.78	40.65
CDY36682	Canola	cytosol, nucleus, plastid	37.37	40.22
CDY03684	Canola	nucleus	36.36	39.91
Bra007985.1-P	Field mustard	nucleus	36.36	39.91
Os06t0698400-01	Rice	cytosol, nucleus, plastid	9.7	39.02
VIT_18s0001g01800.t01	Wine grape	nucleus	42.02	38.17
Bra003913.1-P	Field mustard	plastid	37.37	37.99
Os06t0248200-01	Rice	cytosol	10.51	31.71
CDY37934	Canola	nucleus	35.76	31.49
PGSC0003DMT400033572	Potato	plastid	25.66	31.28
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.92	27.31

Protein Annotations

Gene3D:1.10.20.70	MapMan:16.2.1.3.2	Gene3D:3.30.70.330	EntrezGene:4349923	ProteinID:AAX95801.1	ProteinID:ABA91714.1
EMBL:AK067921	ProteinID:BAF27728.1	ProteinID:BAT12914.1	InterPro:CSTF2_C_sf	InterPro:CSTF2_hinge	InterPro:CSTF_C
ProteinID:EEE51745.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005847
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0031047
GO:GO:0031123	GO:GO:0031124	GO:GO:0040007	GO:GO:0042868	GO:GO:0045892	GO:GO:0048589
GO:GO:0060968	GO:GO:0098789	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR038192	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os11g0176100	EnsemblPlants:Os11t0176100-01	PFAM:PF00076	PFAM:PF14304	PFAM:PF14327	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	UniProt:Q53PI0	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0000509250	RefSeq:XP_015617006.1	SEG:seg	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os11t0176100-01)

Coordinates

chr11:+:3795981..3801061

Molecular Weight (calculated)

52958.2 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.391

Length

495 amino acids

Sequence
(BLAST)

001: MAAAAPAGAQ NRCVFVGNIP YDATEEQLVQ ICEEVGPVVS FRLVIDKETG KPKGYGFCEY KDEETALSAR RNLQGYEING RQLRVDFAEN GRNADRNREK
101: GRGGPGMASS VDTQKQLAGT PVVGDTGLHQ PVGLPSAIHA ASVMAGILGG SQTANVQNGL PVQYGLGNDP LTHYLARMSK HQLYEIMSEL KSLTSQNKDV
201: ANKLLQGIPQ LSKALFQSQI MLGMVTPQMM QMAKSQQPSS SLAQSSSHIS EPFPQPDAMI SSVPRPSASL PNPNVLQDPS AQLHNFPQYP HSSQPAGTIF
301: PHGSQSGVGI HPPIVSQLLG ASSSVPPLPL ATSGSLISQV QPPFMPHHPR PPAMPAGMQQ LPLTHPHVPQ VPAIPDIAQK EMRFPEQANR STEFAHHPKL
401: RKLEDGTSTP GIVNNNPAVY PAPSQGMLPG GPSGSYNSAA VSFQQPENEV PQLTPDVESA LLQQVLQLTP EQLSSLPVEQ QQQVIQLQKM LSAGK

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.