CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83892
CDX88655
CDX96753
CDY02182
CDY11833
CDY43886
CDY58694
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	CDX83892	AT1G17760.1	12379796
AT1G71800.1	CDX96753	AT1G17760.1	12379796
AT1G71800.1	CDX83892	AT1G17760.1	18479511
AT1G71800.1	CDX96753	AT1G17760.1	18479511
AT1G71800.1	CDX88655	AT5G58040.1	18479511
AT1G71800.1	CDY11833	AT5G58040.1	18479511
AT1G71800.1	CDY43886	AT5G58040.1	18479511
AT1G71800.1	CDY70580	AT5G58040.1	18479511
AT1G71800.1	CDY02182	AT5G60940.1	18479511
AT1G71800.1	CDY58694	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68301	Canola	cytosol, nucleus, plastid	95.22	95.22
AT1G71800.1	Thale cress	nucleus	82.61	82.43
CDY03684	Canola	nucleus	72.39	73.84
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	28.91	59.11
CDY37934	Canola	nucleus	71.74	58.72
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	32.39	49.5
GSMUA_Achr10P...	Banana	nucleus	34.57	41.09
KRG91748	Soybean	nucleus	48.91	40.76
KRH35025	Soybean	nucleus	48.04	40.55
Solyc02g069160.2.1	Tomato	nucleus	43.91	39.69
PGSC0003DMT400026767	Potato	nucleus	43.48	39.29
VIT_18s0001g01800.t01	Wine grape	nucleus	46.52	39.27
KXG27890	Sorghum	cytosol	41.52	38.98
Zm00001d004779_P001	Maize	nucleus	41.52	38.9
TraesCS4B01G094500.1	Wheat	nucleus	40.22	37.76
TraesCS4D01G091300.1	Wheat	nucleus	40.22	37.76
Os11t0176100-01	Rice	nucleus	40.22	37.37
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	40.65	35.15
Zm00001d053041_P002	Maize	cytosol	40.0	31.56
PGSC0003DMT400033572	Potato	plastid	25.0	28.33
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.74	25.0

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	GO:A0A078HFU9	UniProt:A0A078HFU9	EnsemblPlants:CDY36682	ProteinID:CDY36682
ProteinID:CDY36682.1	InterPro:CSTF2_hinge	InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124
EnsemblPlantsGene:GSBRNA2T00062451001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEAC22	:	:	:

Description

BnaCnng07840DBnaCnng07840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFU9]

Coordinates

chrLK032381:-:222402..225035

Molecular Weight (calculated)

50292.1 Da

IEP (calculated)

9.741

GRAVY (calculated)

-0.530

Length

460 amino acids

Sequence
(BLAST)

001: MASSSQRRCV FVGNIPYDVT EEQLRDICGE VGPVVSFRLV TDRETGKPKG YGFCEYKDEE TALSARRNLQ SYEINGRQLR VDFAENDKGT DKTRDQGQGG
101: PALPAATESQ KQVGRPVDSN LHQPVGINLA ISAASVMAGA LGGPQVGTQS TLQVPASDPL TLHLAKMSRS QLSEIISSIK LMATQNKEQA RQLLVSRPQL
201: LKAVFLAQIM LGIVSPQVLQ TPNIVQAPNL MPGPSVQETQ LSGQVSTQNL LPPLAQKSQQ LSRPPHSQFP VQQSSKQPFS QIPQLVAQPG PSSMNAQVQG
301: LSETAPFQRQ KQLVPTSISM GYGVQTSVPN NAIQPSQVPR PPLTNSVMQQ GGHMVSLNYG KRINEGPHES INRPSKMMRV DDRRTASFSE GHASNSMLPN
401: PVQVQERAHQ THISPDVQAT LLQQVMNLTP EQLRLLTPEQ QQEVRKLQQA LKQDNMTQHS

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.