CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68301
CDX77591
CDX80392
CDX88053
CDX98205
CDY03684
CDY12057
CDY36682
CDY37934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60940.1	CDX77591	AT1G30460.1	18479511
AT5G60940.1	CDX98205	AT1G30460.1	18479511
AT5G60940.1	CDY12057	AT1G30460.1	18479511
AT5G60940.1	CDX68301	AT1G71800.1	18479511
AT5G60940.1	CDY03684	AT1G71800.1	18479511
AT5G60940.1	CDY36682	AT1G71800.1	18479511
AT5G60940.1	CDY37934	AT1G71800.1	18479511
AT5G60940.1	CDX80392	AT5G23880.1	18479511
AT5G60940.1	CDX88053	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02182	Canola	cytosol	94.0	97.14
AT5G60940.1	Thale cress	cytosol	89.38	90.21
Solyc12g038540.1.1	Tomato	cytosol	10.85	72.31
PGSC0003DMT400059810	Potato	cytosol	26.33	69.51
GSMUA_Achr6P35010_001	Banana	cytosol	51.73	67.07
KRH54731	Soybean	cytosol, nucleus	65.13	66.35
TraesCS5D01G402200.1	Wheat	cytosol	60.05	62.35
KRH63183	Soybean	cytosol	46.19	62.31
KXG37531	Sorghum	cytosol	60.51	61.94
TraesCS5A01G392400.1	Wheat	cytosol	59.58	60.85
TraesCS5B01G397200.1	Wheat	cytosol	59.82	60.8
HORVU5Hr1G095960.3	Barley	cytosol	59.35	60.76
Os03t0754900-02	Rice	cytosol	60.74	60.6
VIT_17s0000g05080.t01	Wine grape	cytosol	65.13	58.26
Zm00001d034054_P002	Maize	cytosol	59.35	57.49

Protein Annotations

MapMan:16.2.1.3.3	Gene3D:2.130.10.10	UniProt:A0A078J444	EnsemblPlants:CDY58694	ProteinID:CDY58694	ProteinID:CDY58694.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00025016001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44133
PANTHER:PTHR44133:SF1	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDB7DA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC07g49820DBnaC07g49820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J444]

Coordinates

chrLK033690:+:29695..32218

Molecular Weight (calculated)

47457.9 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.251

Length

433 amino acids

Sequence
(BLAST)

001: MENSGSLEQA LQEGNILRQL NALIVAHLRH HNLSQACLVA SDVASATMTP LNVEVSPTRL LELVAKGLAA ENNGSLRGVS SSVLLPTSYG SVTNPRTASI
101: DFSATHVKGS SKTLPKHESK QLSEHKSVVR CARFSSDGMF FATGGADTSI KLFEVPKVKQ MLSGDTQARP LIRSFYDHAE PINDLDFHAR STILVSSAKD
201: NCIKFFDFSK TTAKRAFKVF QDTHNVRSVS FHPSGEFLLA GTDHAVPHLY DVNTYQCFLP STFPDSGVNG AINQVRYSST GSVYVTASKD GSIRLFDGVS
301: AKCVRSISSA HGKSEVTSAV FTRDQRFVLS SGKDSTVKLW EIASGRMVKE YLGAKRLKLR SQAIFNDTEE FVISIDEGNN EVVTWDARTA EKVAKWPSNH
401: NGVPRWVEHS PVESVFVTCG TTDRSVRFWK ESV

Best Arabidopsis Sequence Match ( AT5G60940.1 )
(BLAST)

001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV

Arabidopsis Description

CSTF50Cleavage stimulation factor subunit 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4J2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.