CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83892
CDX88655
CDX96753
CDY02182
CDY11833
CDY43886
CDY58694
CDY70580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	CDX83892	AT1G17760.1	12379796
AT1G71800.1	CDX96753	AT1G17760.1	12379796
AT1G71800.1	CDX83892	AT1G17760.1	18479511
AT1G71800.1	CDX96753	AT1G17760.1	18479511
AT1G71800.1	CDX88655	AT5G58040.1	18479511
AT1G71800.1	CDY11833	AT5G58040.1	18479511
AT1G71800.1	CDY43886	AT5G58040.1	18479511
AT1G71800.1	CDY70580	AT5G58040.1	18479511
AT1G71800.1	CDY02182	AT5G60940.1	18479511
AT1G71800.1	CDY58694	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36682	Canola	cytosol, nucleus, plastid	95.22	95.22
Bra003913.1-P	Field mustard	plastid	98.26	92.81
AT1G71800.1	Thale cress	nucleus	82.61	82.43
CDY03684	Canola	nucleus	72.17	73.61
CDY37934	Canola	nucleus	71.52	58.54
Solyc09g065080.1.1	Tomato	cytosol, nucleus, plastid	28.26	57.78
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	32.39	49.5
KRG91748	Soybean	nucleus	49.78	41.49
GSMUA_Achr10P...	Banana	nucleus	34.78	41.34
KRH35025	Soybean	nucleus	48.91	41.28
KXG27890	Sorghum	cytosol	41.96	39.39
Zm00001d004779_P001	Maize	nucleus	41.96	39.31
Solyc02g069160.2.1	Tomato	nucleus	43.04	38.9
VIT_18s0001g01800.t01	Wine grape	nucleus	46.09	38.9
PGSC0003DMT400026767	Potato	nucleus	42.61	38.51
Os11t0176100-01	Rice	nucleus	40.65	37.78
TraesCS4B01G094500.1	Wheat	nucleus	40.22	37.76
TraesCS4D01G091300.1	Wheat	nucleus	40.22	37.76
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	40.65	35.15
Zm00001d053041_P002	Maize	cytosol	40.65	32.08
PGSC0003DMT400033572	Potato	plastid	24.57	27.83
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.74	25.0

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	GO:A0A078BU53	EnsemblPlants:CDX68301	ProteinID:CDX68301	ProteinID:CDX68301.1
InterPro:CSTF2_hinge	InterPro:CSTF_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031124	EnsemblPlantsGene:GSBRNA2T00099590001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF14304	PFAM:PF14327	PFscan:PS50102
PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EDFF51	:	:	:	:	:

Description

BnaA07g23410D

Coordinates

chrLK031787:-:4902916..4905966

Molecular Weight (calculated)

50277.9 Da

IEP (calculated)

9.580

GRAVY (calculated)

-0.546

Length

460 amino acids

Sequence
(BLAST)

001: MASSSQRRCV FVGNIPYDVT EEQLRDICGE VGPVVSFRLV TDRETGKPKG YGFCEYKDEE TALSARRNLQ SYEINGRQLR VDFAENDKGT DKTRDQGQGG
101: PALPTATESQ KQVGGSVDTN MHQPVGLNLA ISAASVMAGA LGGPQVGTQS TLQAPASDPL TLHLAKMSRS QLSEIISSVK LMATQNKEQA RQLLVSRPQL
201: LKAVFLAQIM LGIVSPQVLQ TPNIVQAPNH MSGSSIQDTQ LSGQVSTQNL LPPLAQRSQQ LSRPTHSQFP IQQSSKQPFS QIPQLVAQPG PSSMNAQVQG
301: LSETAPFQRQ KQLVPSSISM GYSVQTSVPN SAIQPSQVPR PQLTNSVMQQ GGHMVSLNYG KRINEGPHES INRPSKMMRV DERRTASFSE GHASNSMLPN
401: PVQVQERAHQ TQISPDVQAT LLQQVMNLTP EQLRLLTPEQ QQEVRKLQQA LKQDNMTQHS

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.