Factsheet for Solyc09g065080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g005320.2.1
Solyc10g050540.1.1
Solyc12g038540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71800.1	Solyc10g050540.1.1	AT1G17760.1	12379796
AT1G71800.1	Solyc10g050540.1.1	AT1G17760.1	18479511
AT1G71800.1	Solyc07g005320.2.1	AT5G58040.1	18479511
AT1G71800.1	Solyc12g038540.1.1	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P17820_001	Banana	cytosol, golgi, nucleus	61.33	45.85
GSMUA_Achr10P...	Banana	nucleus	61.78	35.92
Solyc02g069160.2.1	Tomato	nucleus	80.44	35.56
AT1G71800.1	Thale cress	nucleus	60.44	29.5
CDY36682	Canola	cytosol, nucleus, plastid	59.11	28.91
Bra007985.1-P	Field mustard	nucleus	57.33	28.6
CDY03684	Canola	nucleus	57.33	28.6
CDX68301	Canola	cytosol, nucleus, plastid	57.78	28.26
VIT_18s0001g01800.t01	Wine grape	nucleus	65.33	26.97
Bra003913.1-P	Field mustard	plastid	58.22	26.9
KRH35025	Soybean	nucleus	64.44	26.61
KXG27890	Sorghum	cytosol	57.33	26.33
Zm00001d004779_P001	Maize	nucleus	57.33	26.27
KRG91748	Soybean	nucleus	64.44	26.27
Os11t0176100-01	Rice	nucleus	56.89	25.86
TraesCS4B01G094500.1	Wheat	nucleus	54.22	24.9
TraesCS4D01G091300.1	Wheat	nucleus	54.22	24.9
CDY37934	Canola	nucleus	57.33	22.95
HORVU4Hr1G019040.4	Barley	cytosol, mitochondrion, nucleus, plastid	53.78	22.74
Zm00001d053041_P002	Maize	cytosol	56.44	21.78
Zm00001d007684_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.44	21.3
PGSC0003DMT400033572	Potato	plastid	37.33	20.69

Protein Annotations

MapMan:16.2.1.3.2	Gene3D:3.30.70.330	InterPro:CSTF2_hinge	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005847	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0098789	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4CUD5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF14327	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc09g065080.1	EnsemblPlants:Solyc09g065080.1.1	UniParc:UPI000276C50A	SEG:seg

Description

No Description!

Coordinates

chr9:+:62917367..62920778

Molecular Weight (calculated)

24444.1 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.352

Length

225 amino acids

Sequence
(BLAST)

001: MATSDSQRRS VFVGNIPYDA TEEQLIQICE EVGPVVSFRL VTDRETGKLK GYGFCEYRDE ETALSARRNL QGYKINGRKL RVDFAGNDKN SDRNREQECG
101: GPGMVANADP KMHIGGPAVP VDSTLQQPLG MQVAMTAAAV MAGALGASQS GNSFNTSGVD PLTLHMSKLS RSHLNDVMSE FKAMCTQNKE QTRQLLLAIP
201: NLSKALFQVL TYARCSTYLQ ASGVA

Best Arabidopsis Sequence Match ( AT1G71800.1 )
(BLAST)

001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S

Arabidopsis Description

CSTF64Cleavage stimulating factor 64 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9G6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.