Factsheet for Solyc10g050540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021760.2.1
Solyc02g069160.2.1
Solyc02g070240.2.1
Solyc07g005320.2.1
Solyc09g065080.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT1G17760.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT1G17760.1	Solyc02g021760.2.1	AT1G30460.1	20214900
AT1G17760.1	Solyc02g070240.2.1	AT1G30460.1	20214900
AT1G17760.1	Solyc02g069160.2.1	AT1G71800.1	12379796
AT1G17760.1	Solyc09g065080.1.1	AT1G71800.1	12379796
AT1G17760.1	Solyc02g069160.2.1	AT1G71800.1	18479511
AT1G17760.1	Solyc09g065080.1.1	AT1G71800.1	18479511
AT1G17760.1	Solyc07g005320.2.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94131	Soybean	cytosol, nucleus	73.82	74.02
Os12t0571900-01	Rice	cytosol	65.72	66.62
GSMUA_Achr9P17150_001	Banana	plastid	69.5	65.36
CDX96753	Canola	nucleus	63.83	65.15
AT1G17760.1	Thale cress	nucleus	63.83	64.44
TraesCS3D01G073700.1	Wheat	nucleus	62.75	64.14
KXG22737	Sorghum	cytosol	64.78	64.0
TraesCS3A01G074000.1	Wheat	nucleus	62.62	64.0
Zm00001d038093_P007	Maize	nucleus	64.51	63.99
Bra016588.1-P	Field mustard	nucleus	61.67	63.12
VIT_11s0065g00710.t01	Wine grape	cytosol	76.92	62.98
CDX83892	Canola	nucleus	63.43	62.83
TraesCS3B01G088300.3	Wheat	nucleus	62.89	62.8
HORVU3Hr1G013370.4	Barley	plastid	62.62	58.96

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006379	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892
GO:GO:0060968	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K4D0K9
PFAM:PF05843	PFAM:PF13428	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19980	SMART:SM00386
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc10g050540.1	EnsemblPlants:Solyc10g050540.1.1	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000276A3C7	SEG:seg	:	:	:

Description

Cleavage stimulation factor subunit 77 [Source:Projected from Arabidopsis thaliana (AT1G17760) UniProtKB/Swiss-Prot;Acc:Q8GUP1]

Coordinates

chr10:-:49975220..50008013

Molecular Weight (calculated)

83183.2 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.478

Length

741 amino acids

Sequence
(BLAST)

001: MTDKYNVEAA EILANEALRS PISGAVPIYE QLLSTFPTAA KYWKQYVEAH MAVNNDDATK QIFSRCLLNC LQIPLWRCYI RFIRKVNDKR GNEGQEETRK
101: AFDFMLNYVG ADIASGPVWM EYIAFLRSLP APTAQEESQR MTSVRKIYQR AIVTPTHHVE QLWRDYENFE NSISRALAKG LVSEYQPKYN SARAVYRERK
201: KYTDEIDWNM LAIPPSGSSK EEMQWMAWKK LLAFEKANPQ RIDSASANKR IVFTYEQCLM FLYHYPDIWY EYATWHAKAG SVDSAIKVFQ RALKALPDSE
301: MLRYAYAELE ESRGAIQAAK KVYESLFGDG SNASALSHIQ FIRFLRRSEG VEAARKYFVD ARKSPNCTYH VYVAYAMMAF CLDKDAKMAH NVFEAGLKRF
401: MHEPGYILEY ADFLYRLNDD RNIRALFERA LSSLPPEESV EVWKKFTQFE QTYGDLASML KVEQRRKEAL SRTGDDGASE LESSLHDVVS RYSFMDLWPC
501: SSNDLDHLAR QEWLARNINK KPDKPTLGIE AGSADKTTSG VSSNTNPPAK VVYPDTSKMT VYDPRQIPGP AALAAPSASG TLPYSGPFSS NGPPIALNDI
601: LKSLPPAFAA FVANLPAVEG PSPDADFVIS VCLQSNIPAA TGKSGTASLP LLSGAAPSTS DLSDSSKFRP RDRQPGKRKD MDRPEDDEST TMQSQPLPRD
701: LFKIRQLQKN RVGNSSRVTS SYTGSASYGS ALSGDLSGST S

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.