Factsheet for VIT_11s0065g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g04600.t01
VIT_11s0037g00130.t01
VIT_18s0001g01800.t01
VIT_18s0086g00620.t01
VIT_18s0086g00630.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT1G17760.1	VIT_10s0003g04600.t01	AT1G30460.1	20214900
AT1G17760.1	VIT_18s0086g00620.t01	AT1G66500.1	18479511
AT1G17760.1	VIT_18s0086g00630.t01	AT1G66500.1	18479511
AT1G17760.1	VIT_18s0001g01800.t01	AT1G71800.1	12379796
AT1G17760.1	VIT_18s0001g01800.t01	AT1G71800.1	18479511
AT1G17760.1	VIT_18s0086g00620.t01	AT5G43620.1	18479511
AT1G17760.1	VIT_18s0086g00630.t01	AT5G43620.1	18479511
AT1G17760.1	VIT_11s0037g00130.t01	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94131	Soybean	cytosol, nucleus	63.09	77.27
Solyc10g050540.1.1	Tomato	nucleus	62.98	76.92
CDX96753	Canola	nucleus	55.8	69.56
AT1G17760.1	Thale cress	nucleus	55.69	68.66
GSMUA_Achr9P17150_001	Banana	plastid	59.67	68.53
Bra016588.1-P	Field mustard	nucleus	54.48	68.09
Os12t0571900-01	Rice	cytosol	54.92	67.99
CDX83892	Canola	nucleus	55.8	67.51
TraesCS3A01G074000.1	Wheat	nucleus	52.6	65.66
TraesCS3D01G073700.1	Wheat	nucleus	52.6	65.66
KXG22737	Sorghum	cytosol	53.59	64.67
Zm00001d038093_P007	Maize	nucleus	53.37	64.66
TraesCS3B01G088300.3	Wheat	nucleus	52.71	64.29
HORVU3Hr1G013370.4	Barley	plastid	52.38	60.23

Protein Annotations

Gene3D:1.25.40.1040	EntrezGene:100262033	wikigene:100262033	MapMan:16.2.1.3.1	ProteinID:CCB48937	ProteinID:CCB48937.1
UniProt:F6H9L6	EMBL:FN595502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006379	GO:GO:0006396	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0015074
GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892	GO:GO:0060968	InterPro:HAT
InterPro:IPR011990	InterPro:IPR019734	EntrezGene:LOC100262033	wikigene:LOC100262033	PFAM:PF05843	PFAM:PF13428
PFAM:PF13966	PFscan:PS50005	PANTHER:PTHR19980	InterPro:RVT-Znf	SMART:SM00386	SUPFAM:SSF48452
InterPro:Suf	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000210873D	ArrayExpress:VIT_11s0065g00710	EnsemblPlantsGene:VIT_11s0065g00710
EnsemblPlants:VIT_11s0065g00710.t01	unigene:Vvi.22873	RefSeq:XP_002265193	RefSeq:XP_002265193.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:14650800..14737404

Molecular Weight (calculated)

102001.0 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.471

Length

905 amino acids

Sequence
(BLAST)

001: MSETTSNPTS ATNNNNQTAV VDKYNVETAE ILANEAQHLP ISEAVPIYEQ LLTVFPTAMA VNKNATVNEM WDHSNGPGGW NLRFHRDFND WEMDMIRGLL
101: IRLRDVKLSS EEDGVLWKVG GHGKYGVKEA YNGLVVINAC DFPHRGVWVN KVPTKVAFFA WEAAWGKILT LDRLQKRGWQ FPNRCFLCGC EEERAKYWRQ
201: YLEAQMAVNN DEATKQIFSR CLLNCFQIPL WRCYIRFIRK VNEKKGVEGQ EETRKAFDFM LNFVGADIAS GPVWMEYIAF LKSYPAQTTQ EESQRMTAVR
301: KAYQKAIVTP THHVEQLWKD YENFENSVSR ALAKGLLSEY QSKYNSAKAV YREQKKYVDE IDWNMLAVPP TGTSKEEMQW MAWKKFLAFE KGNPQRIDSN
401: SSNKRILYTY EQCLMYLYHY PDIWYDYATW HARNGSIDAA IKVFQRASKA LPDSDMLRYA YAELEESRGA IQPAKKIYES LLGDGVNATA LVHIQFIRFL
501: RRTEGVEAAR KYFLDARKSP NCTYHVFVAY AMMAFCLDKD PKVAHNVFEA GLKRFMHEPG YILEYADFLS RLNDDRNIRA LFERALSSLP PDESVEVWKR
601: FTQFEQTYGD LASMLKVEQR RKEALSRTGE DGTTALESSL QDVVSRYSFM DLWPCSSRDL DHLARQEWLA KNINKKVEKS AILKGVGSTE KSASGFTTNS
701: NPATKVFYPD TSQMVVYDPR QKPGTGALPS TTAPVLPSIS GTLSNPSVPM VSSRPANPLD EILKSTPPAL VAFIANLPAV EGPSPDVDVV LSICLQSNVS
801: TGQTGLSTQL AAGPVPSTSD LSGSSKSHPV PSGSSFKPMR DRQPGKRKDL DRQEDDETAT AQSLPLPRDV FKIRQIRKAR GGTTSQTGSA SYGSAFSGEL
901: SGSTG

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.