Factsheet for HORVU3Hr1G013370.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G009390.7
HORVU4Hr1G019040.4
HORVU7Hr1G069840.2
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT1G17760.1	HORVU7Hr1G106340.5	AT1G30460.1	20214900
AT1G17760.1	HORVU7Hr1G069840.2	AT1G66500.1	18479511
AT1G17760.1	HORVU4Hr1G019040.4	AT1G71800.1	12379796
AT1G17760.1	HORVU4Hr1G019040.4	AT1G71800.1	18479511
AT1G17760.1	HORVU7Hr1G069840.2	AT5G43620.1	18479511
AT1G17760.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G073700.1	Wheat	nucleus	89.71	97.38
TraesCS3A01G074000.1	Wheat	nucleus	89.2	96.83
TraesCS3B01G088300.3	Wheat	nucleus	89.96	95.42
Os12t0571900-01	Rice	cytosol	76.24	82.08
KXG22737	Sorghum	cytosol	73.06	76.67
Zm00001d038093_P007	Maize	nucleus	72.55	76.44
GSMUA_Achr9P17150_001	Banana	plastid	64.55	64.47
Solyc10g050540.1.1	Tomato	nucleus	58.96	62.62
KRG94131	Soybean	cytosol, nucleus	58.58	62.38
CDX96753	Canola	nucleus	54.76	59.37
Bra016588.1-P	Field mustard	nucleus	53.24	57.87
CDX83892	Canola	nucleus	54.38	57.22
AT1G17760.1	Thale cress	nucleus	53.11	56.95
VIT_11s0065g00710.t01	Wine grape	cytosol	60.23	52.38

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	UniProt:A0A287K5D3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892
GO:GO:0060968	InterPro:HAT	EnsemblPlantsGene:HORVU3Hr1G013370	EnsemblPlants:HORVU3Hr1G013370.4	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF05843	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19980	SMART:SM00386
SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000B471F89
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:28878366..28888559

Molecular Weight (calculated)

88628.9 Da

IEP (calculated)

9.132

GRAVY (calculated)

-0.410

Length

787 amino acids

Sequence
(BLAST)

001: PNPCLALASP SPTAAPRPRR RRPRRRRPLR RTHPCAVAPG AEQPSNPSSR RFLPGDSAAV AAMDIYNVEA AEILAHETLN LPIGEAAPIY EKLLATFPTA
101: AKYWKQYVES YIVTNDEETA KQIFSRCLLT CPHINLWRCY INFIKKVNSK RGSEGLEETK KAFDFMLNYV GNDVASGPVW MEYIAFLKSM PVMTPQEESH
201: RMTTIRKVYQ KAILVPTSHV EQLWKDYDNF ENSVSRTLAK GLLSEYQPKF NSAKAVYRER KKYIDDIDWS MLAIPSTGSY KEEQQCLAWK RLLTFEKGNP
301: QRIDATAANR RITFTYEQCL MYLYHHPDVW YDYAMWHAKN GSTDSAIKIF QRAVKALPGS EVLKYAFAEL EESVGAIQPA KTIYESLIAE NASMSSLAHI
401: QFIRFLRRTE GIEAARKYFL EVRKLPSCTY HVYVAYATMS FCLDKDAKVA QNVFEVGLKR FMQEPGYVLE YADFLCRLND DRNVRALFER ALSLLPPEES
501: IEVWKRFSQF EQIYGDLSSM LKVEQRRKEA LSRTSEDVVS SLENTLYDVV SRYNYMDLWP CSSKELDYLS RQEWLAKNMF KKADKSVMLT SGGGATLDKG
601: SVGVGANAKL LPQSAKVVRP ETSRMVIYDP RQMKGPVVSA TSSGYTKEVD EIFKMLSPPL TSFITNLPAI EGPSPDIDIV LSVLLQSTLP TGHDVGKPSA
701: PVPGPATSDL LGPRNQNGSV RRPPKRKAVE RQEEEDAAVA AQSRAMPDIF RLRQIQRSRG TGPAQSGSAA MSSGSMFSGE QSANSSS

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.