CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
KXG27890
KXG37677
OQU80002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17760.1	EER88812	AT1G30460.1	18479511
AT1G17760.1	EER88812	AT1G30460.1	20214900
AT1G17760.1	OQU80002	AT1G66500.1	18479511
AT1G17760.1	KXG27890	AT1G71800.1	12379796
AT1G17760.1	KXG27890	AT1G71800.1	18479511
AT1G17760.1	OQU80002	AT5G43620.1	18479511
AT1G17760.1	KXG37677	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038093_P007	Maize	nucleus	94.53	94.91
Os12t0571900-01	Rice	cytosol	79.07	81.12
TraesCS3D01G073700.1	Wheat	nucleus	76.13	78.76
TraesCS3A01G074000.1	Wheat	nucleus	75.87	78.48
TraesCS3B01G088300.3	Wheat	nucleus	76.27	77.09
HORVU3Hr1G013370.4	Barley	plastid	76.67	73.06
KRG94131	Soybean	cytosol, nucleus	64.67	65.63
GSMUA_Achr9P17150_001	Banana	plastid	68.8	65.48
Solyc10g050540.1.1	Tomato	nucleus	64.0	64.78
CDX96753	Canola	nucleus	58.27	60.19
AT1G17760.1	Thale cress	nucleus	57.6	58.86
Bra016588.1-P	Field mustard	nucleus	56.4	58.43
CDX83892	Canola	nucleus	57.87	58.02
VIT_11s0065g00710.t01	Wine grape	cytosol	64.67	53.59

Protein Annotations

Gene3D:1.25.40.1040	MapMan:16.2.1.3.1	UniProt:A0A1B6PAU9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031047	GO:GO:0031123	GO:GO:0042868	GO:GO:0045892
GO:GO:0060968	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KXG22737
ProteinID:KXG22737	ProteinID:KXG22737.1	PFAM:PF05843	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR19980
SMART:SM00386	EnsemblPlantsGene:SORBI_3009G260500	SUPFAM:SSF48452	InterPro:Suf	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00081AC180	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:59350969..59367239

Molecular Weight (calculated)

84357.2 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.403

Length

750 amino acids

Sequence
(BLAST)

001: MPEENSGGGA GHGDGGDIYN VRAAEILANE ALLLPINEAA PIYEKLLATF PTAAKYWKQY VEAYMATNNH EATKQIFSRC LLNCLHISLW RCYINFIRRI
101: NDKRGSEGLD ETKKAFDFML NYVGNDAASG PVWMEYINFL KSMPAVTPHE ESHRMTTVRK VYQKAILVPT NHVEQLWKDY ENFENSVSRT LAKGLLSEYQ
201: PKFNSAKAVY RERKKFIDDI DWNVLATPPT GSYKEEQQCM AWKRLLVFEK GNPQRIDATT ANRRVTFTYE QCLMYLYHHP DIWYDYAMWH AKNGSMDSAS
301: KIFQRALKAI PDSEVLKYAF AEMEESRGAI QTAKTIYESL LGENASVTSL ANIQFIRFLR RTEGIEAARK YFLDARKSPS CTYHLYVAYA TMAFCVDKDA
401: KVAQSVFEAG LKRFMHEPGY ILEYADFLCR LNDDRNVRAL FERALSLLPP EESTEVWRRF AQFEQIYGDL SSMLKVEQRR KEALSRTSED VLSASENTLH
501: DIVSRYSYMD LWPCSSKELD YLARQEWLSK NIFKKVDKSA MLNSSSMLDK GAAGFSASAR LLPQSAKVVR PETSQMIIYD PRQMKGPEFA ATSSGYTKEV
601: EDMLKVLSPM MVSFIKNLPA IEGPSPDIDV VLSVLLQSTL PVAQSAGKAG GVSELSGIGK AGLNQNGSVH RPPRERRKDV ERQGVQEEED ASTVQSRAAV
701: PRDIFRLRQI QRSRGLGVGA AAAASQSGSS AFSFSGGGSA FSGDHSASTD

Best Arabidopsis Sequence Match ( AT1G17760.1 )
(BLAST)

001: MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK
101: AFEFMLNYIG TDIASGPIWT EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG LVNEYQPKFN SARAVYRERK
201: KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE
301: MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS
401: EPVYILKYAD FLTRLNDDRN IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE SSLQDVVSRY SYMDLWPCTS
501: NDLDHLARQE LLVKNLNKKA GKTNLPHVPA AIGSVASSSK VVYPDTSQMV VQDPTKKSEF ASSANPVAAS ASNTFPSTVT ATATHGSAST FDEIPKTTPP
601: ALVAFLANLP IVDGPTPNVD VVLSICLQSD FPTGQTVKQS FAAKGNPPSQ NDPSGPTRGV SQRLPRDRRA TKRKDSDRQE EDDTATVQSQ PLPTDVFRLR
701: QMRKARGIAT SSQTPTGSTS YGSAFSGELS GSTG

Arabidopsis Description

CSTF77Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.