CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
EER93127
EES01080
KXG22737
KXG25932
KXG36988
KXG37531
KXG37677
OQU80002
OQU92698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30460.1	KXG22737	AT1G17760.1	18479511
AT1G30460.1	EER88812	AT1G30460.1	18479511
AT1G30460.1	OQU80002	AT1G66500.1	18479511
AT1G30460.1	EES01080	AT2G01730.1	16897494
AT1G30460.1	KXG36988	AT3G06560.1	16897494
AT1G30460.1	OQU92698	AT3G06560.1	16897494
AT1G30460.1	KXG36988	AT3G06560.1	18479511
AT1G30460.1	OQU92698	AT3G06560.1	18479511
AT1G30460.1	OQU80002	AT4G04885.1	18479511
AT1G30460.1	EER93127	AT5G23880.1	16897494
AT1G30460.1	EER93127	AT5G23880.1	18479511
AT1G30460.1	KXG25932	AT5G51660.1	16897494
AT1G30460.1	KXG25932	AT5G51660.1	18479511
AT1G30460.1	KXG37677	AT5G58040.1	16282318
AT1G30460.1	KXG37677	AT5G58040.1	18479511
AT1G30460.1	KXG37531	AT5G60940.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014378_P001	Maize	cytosol, nucleus, peroxisome	96.12	96.88
Zm00001d014379_P001	Maize	nucleus	36.12	94.72
Zm00001d036595_P001	Maize	nucleus	36.43	93.63
Zm00001d036594_P001	Maize	cytosol, nucleus, peroxisome	92.25	91.96
TraesCS7D01G450100.1	Wheat	nucleus	85.27	84.62
TraesCS7A01G461800.1	Wheat	nucleus	85.12	84.46
HORVU7Hr1G106340.5	Barley	cytosol	84.34	83.82
TraesCS7B01G363200.2	Wheat	nucleus	84.81	83.77
Os06t0677700-00	Rice	cytosol, nucleus, plasma membrane	88.06	82.8
GSMUA_Achr6P19820_001	Banana	nucleus	66.05	61.56
GSMUA_Achr9P30440_001	Banana	nucleus	60.78	59.67
KRH36762	Soybean	nucleus	62.33	59.03
VIT_10s0003g04600.t01	Wine grape	nucleus	61.4	58.84
KRH11760	Soybean	nucleus	62.17	58.03
CDX98205	Canola	nucleus	48.68	57.72
AT1G30460.1	Thale cress	nucleus	56.12	57.37
Solyc02g070240.2.1	Tomato	nucleus	59.38	57.08
Bra014881.1-P	Field mustard	nucleus	49.77	55.34
Bra010767.1-P	Field mustard	nucleus	53.18	54.44
CDX77591	Canola	nucleus	49.46	53.61
Solyc02g021760.2.1	Tomato	nucleus	55.97	52.39
CDY12057	Canola	cytosol, nucleus, peroxisome	52.4	51.52
PGSC0003DMT400054373	Potato	cytosol, nucleus, plastid	18.6	45.11

Protein Annotations

MapMan:16.2.1.2.5	Gene3D:3.10.590.10	Gene3D:4.10.1000.10	EntrezGene:8083208	UniProt:C5Z7U3	ncoils:Coil
EnsemblPlants:EER88812	ProteinID:EER88812	ProteinID:EER88812.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0004521	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006378	GO:GO:0006396	GO:GO:0006950	GO:GO:0006979
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009719
GO:GO:0009987	GO:GO:0016787	GO:GO:0031124	GO:GO:0034052	GO:GO:0043068	GO:GO:0046872
GO:GO:1900363	GO:GO:2000031	InterPro:IPR000571	InterPro:IPR007275	PFAM:PF04146	PFscan:PS50103
PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF59	SMART:SM00356	EnsemblPlantsGene:SORBI_3010G228700	SUPFAM:SSF90229
UniParc:UPI0001A88F5A	RefSeq:XP_002437445.1	InterPro:YTH_domain	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:57165982..57172412

Molecular Weight (calculated)

70456.6 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.926

Length

645 amino acids

Sequence
(BLAST)

001: MDDGDGGLSF DFEGGLDSVP AAGGGGPVPS STDPGAGGGG GGDGPGMHGR GRGRGSYRQT VCRHWLRGLC MKGEACGFLH QFDKARMPVC RFFRDFGECR
101: EPDCAYKHSY DDVKECNMYK MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY GQNRNNNYNQ QGERPQHPQG SGMPNQNSAE NATAAAPPAG
201: GQQAQTMNQQ PPQQQQKPNT NDQAQGVSNG QQATRIATPL PQGPSRYFIV KSCNRENLEI SVQQGIWATQ RSNEAKLNEA FESTENVILI FSINRTRNFQ
301: GCAKMTSRIG GYIGGGNWKS AHGTAHYGRN FSMQWLKLCE LSFQKTHHLR NPYNDNLPVK ISRDCQELEP FIGEQLASLL YLEPDSELTA MLIAAEAKRE
401: EEKAKGVSAD EAADNQDIVL FDDNEEDEEE ESEEEEEANG QESQGRGRGR GMMWPPQMPM MRGPMMAGRG FPPNMMGDGF GFGGGFGMPD PFGMPRGFPP
501: FVGPRFPGDF ARGPMPGMGF PGRPPQPFPL GLDMMMGPGR GPLMGGMGMG GPGRPNRPMG MAPFMPPPPP NNRAAKREQR RPGGDRGDRF ETVSSDQGNR
601: GHDNTGNSGA DGARAQSGDR YGRSALRDDD SESEEEAAPR RSRKR

Best Arabidopsis Sequence Match ( AT1G30460.1 )
(BLAST)

001: MEDADGLSFD FEGGLDSGPV QNTASVPVAP PENSSSAAVN VAPTYDHSSA TVAGAGRGRS FRQTVCRHWL RGLCMKGDAC GFLHQFDKAR MPICRFFRLY
101: GECREQDCVY KHTNEDIKEC NMYKLGFCPN GPDCRYRHAK LPGPPPPVEE VLQKIQQLTT YNYGTNRLYQ ARNVAPQLQD RPQGQVPMQG QPQESGNLQQ
201: QQQQQPQQSQ HQVSQTLIPN PADQTNRTSH PLPQGVNRYF VVKSNNRENF ELSVQQGVWA TQRSNEAKLN EAFDSVENVI LIFSVNRTRH FQGCAKMTSR
301: IGGYIGGGNW KHEHGTAQYG RNFSVKWLKL CELSFHKTRN LRNPYNENLP VKISRDCQEL EPSVGEQLAS LLYLEPDSEL MAISIAAEAK REEEKAKGVN
401: PESRAENPDI VPFEDNEEEE EEEDESEEEE ESMAGGPQGR GRGRGIMWPP QMPLGRGIRP MPGMGGFPLG VMGPGDAFPY GPGGYNGMPD PFGMGPRPFG
501: PYGPRFGGDF RGPVPGMMFP GRPPQQFPHG GYGMMGGGRG PHMGGMGNAP RGGRPMYYPP ATSSARPGPS NRKTPERSDE RGVSGDQQNQ DASHDMEQFE
601: VGNSLRNEES ESEDEDEAPR RSRHGEGKKR R

Arabidopsis Description

CPSF3030-kDa cleavage and polyadenylation specificity factor 30 [Source:UniProtKB/Swiss-Prot;Acc:A9LNK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.