CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88812
EES01080
KXG25932
KXG37677

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	EER88812	AT1G30460.1	16897494
AT3G06560.1	EER88812	AT1G30460.1	18479511
AT3G06560.1	EES01080	AT2G01730.1	16897494
AT3G06560.1	KXG25932	AT5G51660.1	16897494
AT3G06560.1	KXG37677	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	77.19	91.93
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	81.98	91.85
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	20.33	84.83
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.16	80.5
TraesCS4D01G182000.1	Wheat	nucleus	62.15	69.63
TraesCS4A01G123900.1	Wheat	nucleus	61.98	69.44
TraesCS4B01G180500.1	Wheat	nucleus	61.82	69.26
HORVU4Hr1G052840.1	Barley	plastid	60.5	67.53
Os03t0313300-01	Rice	mitochondrion	59.67	66.12
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	50.74	55.62
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	41.98	45.6
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	36.69	44.49
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	35.21	44.47
Solyc12g099180.1.1	Tomato	cytosol	31.57	43.91
AT3G06560.1	Thale cress	nucleus	35.87	42.8
CDY24682	Canola	nucleus	33.22	41.1
VIT_05s0077g00650.t01	Wine grape	plastid	37.85	40.67
PGSC0003DMT400011757	Potato	nucleus	37.52	40.54
CDY05277	Canola	nucleus	33.72	39.77
Bra029588.1-P	Field mustard	nucleus	33.72	39.69
KXG27007	Sorghum	nucleus	23.31	25.82
OQU76574	Sorghum	nucleus	27.44	23.88
KXG29853	Sorghum	mitochondrion	27.44	23.78
EER93704	Sorghum	cytosol	24.46	19.73

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	UniProt:A0A1Z5S9X4	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	InterPro:NuclTrfase_I-like_C	EnsemblPlants:OQU92698	ProteinID:OQU92698	ProteinID:OQU92698.1	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF28	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	EnsemblPlantsGene:SORBI_3001G392600	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
TMHMM:TMhelix	UniParc:UPI000B8BB1C7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:67880388..67886587

Molecular Weight (calculated)

68824.1 Da

IEP (calculated)

8.384

GRAVY (calculated)

0.023

Length

605 amino acids

Sequence
(BLAST)

001: MALDLAVGGS AARRAETQTL APVLLMGPPP PPPIPPTTGV YLPGPPPPGA LLSRPIPMAL PREVIVYMDE CRSRSLLKFI SDAGIVPSLE DERRRERVVR
101: ELGKIVMEWA KRVAYEQGKQ HWITSATVLT FGSYALGAYG PESDIDVLCI GPYIATLQHH FFVVLRQMLE GRPEVSELQS IEGAKVPLMR FKFNGILVDF
201: PYVQLPFINA AEAMHAFDPH VLENVDGPSW RCLSGVRANR QIIQLVPNMK KFQYLLRCLK LWARKRGLHC HLLGFFAGIH LAILAAYVCR RHPNASINTL
301: LSLFFDIFAH WPWPLPVSLL DPPVLCRGPD GCSLMPIMLP CNPPEFCSSS TTESTFSKIK EELRRGYALT KDTRSTDFDW SWLFASFPYG ARYKCFLRIV
401: LSAPLDEELR DWVGWVKSRF RNLLLKLESL GVYCDPDSSE QVDHTITEPN VVFFWGLVFT RNIQICTSSL KEDFMKSVCN NIYGKEKCAH SDITMAIVGP
501: PQLPKSIFDL SVYSEKLPQH MMGHQLMKQR YRIFFLFMPL AQGIWEFLFF EKLDVNSWIF LQASSKIGSF GRLIPVVRFV QVHAYSCTQH SNWYTSQREV
601: TYSCM

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.