Factsheet for Solyc01g058260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021760.2.1
Solyc02g070240.2.1
Solyc03g007100.2.1
Solyc04g008030.1.1
Solyc07g005320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Solyc02g021760.2.1	AT1G30460.1	16897494
AT3G06560.1	Solyc02g070240.2.1	AT1G30460.1	16897494
AT3G06560.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT3G06560.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT3G06560.1	Solyc04g008030.1.1	AT2G01730.1	16897494
AT3G06560.1	Solyc03g007100.2.1	AT5G51660.1	16897494
AT3G06560.1	Solyc07g005320.2.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	94.78	90.98
Solyc12g099180.1.1	Tomato	cytosol	58.87	64.83
CDY24682	Canola	nucleus	51.36	50.31
CDY05277	Canola	nucleus	52.82	49.32
VIT_05s0077g00650.t01	Wine grape	plastid	57.41	48.85
AT3G06560.1	Thale cress	nucleus	51.57	48.72
Bra029588.1-P	Field mustard	nucleus	51.57	48.05
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	13.99	46.21
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	52.82	45.42
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	14.61	44.03
HORVU0Hr1G029140.2	Barley	cytosol	40.5	42.27
HORVU0Hr1G035930.1	Barley	cytosol	40.5	42.27
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	43.01	41.37
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	43.63	41.14
Os07t0688500-00	Rice	cytosol	44.68	40.84
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	44.68	39.63
Os03t0313300-01	Rice	mitochondrion	44.47	39.01
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	43.63	38.99
TraesCS2D01G095000.1	Wheat	cytosol	42.8	38.75
TraesCS4A01G123900.1	Wheat	nucleus	43.63	38.7
TraesCS4B01G180500.1	Wheat	nucleus	43.63	38.7
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	42.8	38.61
TraesCS4D01G182000.1	Wheat	nucleus	43.22	38.33
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	44.05	38.22
HORVU4Hr1G052840.1	Barley	plastid	43.22	38.19
OQU92698	Sorghum	cytosol, plasma membrane, plastid	44.47	35.21
HORVU2Hr1G016100.3	Barley	cytosol	38.41	34.72
Solyc06g066470.2.1	Tomato	nucleus	32.78	33.19
Solyc12g095890.1.1	Tomato	nucleus	33.61	26.52
Solyc05g008630.2.1	Tomato	nucleus	31.52	22.14
Solyc08g066200.2.1	Tomato	nucleus	33.19	20.2

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	GO:GO:0046872	UniProt:K4AW34	InterPro:NuclTrfase_I-like_C
PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:Solyc01g058260.2	EnsemblPlants:Solyc01g058260.2.1	TMHMM:TMhelix
UniParc:UPI0002761F1D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:65869702..65874380

Molecular Weight (calculated)

55085.2 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.014

Length

479 amino acids

Sequence
(BLAST)

001: MEFGYIERQQ LVDPRHVYTY LPRWSIGLRP NLNLDYQVPH PGGVLGFGGN QDAILRMEME RSMSLFQIMG AEGLVPSLEE EMKRRNAIHK LKKIVREWVQ
101: TVSYHHALPE RYLRFVHNSE SDIDALCVGP CFATIEEDFF IVLRNILASR PEVSGIHCVK GAKVPLMRFK FEGISIDLPY ARLKVISIPE DVDVFNPFFL
201: KNIDDKSWKS LSGVRANRRI LQLVPNVEIF QAVLRCVKLW AKKRGVYGNL LGFFGGVHLA VLSAFICQRH PTASLSALFF IFFKTFAFWP WPTPVILQDG
301: VAWPFIPTDK VLWMPIQLPC SPYQFCHSNT VRSTFFIIKS ELLRGHTLTK DILRPDFDWN NLFEPYPYPR KYEKFVKIFL SASDKDELGD WVGCVKSRFR
401: CLIIKLEELL GFCDPNPTEY VDVDASEPNL VFYWGLPPAM TDMINIGHVE VEFLKSANNV YQGPTGKLKL SIVQADQLP

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.