Factsheet for HORVU0Hr1G035930.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011580.28
HORVU4Hr1G009390.7
HORVU5Hr1G060570.5
HORVU5Hr1G060590.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	HORVU7Hr1G106340.5	AT1G30460.1	16897494
AT3G06560.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT3G06560.1	HORVU5Hr1G060570.5	AT2G01730.1	16897494
AT3G06560.1	HORVU5Hr1G060590.1	AT2G01730.1	16897494
AT3G06560.1	HORVU2Hr1G011580.28	AT5G51660.1	16897494
AT3G06560.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G029140.2	Barley	cytosol	100.0	100.0
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	92.81	85.54
HORVU2Hr1G016100.3	Barley	cytosol	94.99	82.26
TraesCS2D01G095000.1	Wheat	cytosol	92.59	80.34
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	92.81	80.23
Os07t0688500-00	Rice	cytosol	73.2	64.12
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	67.1	57.46
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	67.76	56.34
HORVU4Hr1G052840.1	Barley	plastid	58.61	49.63
CDY24682	Canola	nucleus	45.32	42.54
AT3G06560.1	Thale cress	nucleus	46.19	41.81
Solyc12g099180.1.1	Tomato	cytosol	38.78	40.92
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	44.44	40.88
CDY05277	Canola	nucleus	45.53	40.74
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	42.27	40.5
Bra029588.1-P	Field mustard	nucleus	45.32	40.47
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	49.02	40.4
VIT_05s0077g00650.t01	Wine grape	plastid	48.15	39.25
PGSC0003DMT400011757	Potato	nucleus	43.79	35.89
HORVU4Hr1G013750.2	Barley	nucleus	31.59	26.08
HORVU2Hr1G079870.2	Barley	nucleus	30.07	25.6
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	31.59	21.23
HORVU7Hr1G088370.13	Barley	nucleus	33.55	21.21
HORVU4Hr1G011370.8	Barley	nucleus	30.07	18.25
HORVU2Hr1G105500.3	Barley	cytosol	13.94	11.55

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	UniProt:A0A287E9S1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:HORVU0Hr1G035930	EnsemblPlants:HORVU0Hr1G035930.1
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000B476DC9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:-:221278442..221283341

Molecular Weight (calculated)

52003.5 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.102

Length

459 amino acids

Sequence
(BLAST)

001: MQFLTDEGAI PTPEEEETRE LVIRELKKIV TDWAKGVASE ERVPPRRVTA TVLTYGSYTL GAHGPESDID ALCVGPCIAN LPHHFFVVLR QILKCRPEVS
101: GLQTVENAKV PLMRFRFSGI SVDLTYAQLP VLDAVQAINT SSPQYLRRLD SRSWKSLSGV RVNEQIVQLV PNQEKFQILL RCIKLWARRR GLHCHLLGSF
201: AGIHLAILAA YVCQRFPNAT ANGLFTMFFG IFAHWPWHIP VDLHGQPTNC RHSDGCLMPI VMPCTPPELC ASNMTEGTFR KIREELMRGY VLTKDLGSHD
301: FEWAWIFEPF PYSTTYGQFL RIALCAPTSE ELHDWIGWVK SRFPYLILKL ENIGIECDPN SSQEVDHTVI KPNTVYHWGL IPLSDVYLDP SSLKEDFMKY
401: VINDVYGKVK CTDSELTISI VDASELPKSM SNDSFYSQQH LHEYGVGYQA AADCWSAFG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.