Factsheet for HORVU5Hr1G060590.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G029140.2
HORVU0Hr1G035930.1
HORVU2Hr1G016100.3
HORVU4Hr1G052840.1
HORVU5Hr1G109220.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	HORVU7Hr1G106340.5	AT1G30460.1	16897494
AT2G01730.1	HORVU0Hr1G029140.2	AT3G06560.1	16897494
AT2G01730.1	HORVU0Hr1G035930.1	AT3G06560.1	16897494
AT2G01730.1	HORVU2Hr1G016100.3	AT3G06560.1	16897494
AT2G01730.1	HORVU4Hr1G052840.1	AT3G06560.1	16897494
AT2G01730.1	HORVU5Hr1G109220.1	AT5G23880.1	16897494
AT2G01730.1	HORVU5Hr1G109220.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G202500.1	Wheat	cytosol	95.96	41.39
HORVU5Hr1G060570.5	Barley	cytosol	100.0	35.42
TraesCS5A01G203800.1	Wheat	cytosol	98.48	35.33
TraesCS5D01G210400.1	Wheat	cytosol	97.47	34.96
Os09t0397900-01	Rice	cytosol	96.97	34.35
EES01080	Sorghum	cytosol	93.43	33.15
Zm00001d044213_P001	Maize	cytosol	89.39	31.72
KRH70353	Soybean	cytosol	81.31	30.26
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	79.8	25.77
Bra026637.1-P	Field mustard	cytosol	79.8	25.69
CDY66642	Canola	cytosol	79.8	25.69
CDY09421	Canola	cytosol	79.8	25.69
Solyc04g008030.1.1	Tomato	cytosol	82.83	25.27
GSMUA_Achr3P07540_001	Banana	cytosol	83.84	25.19
HORVU5Hr1G123370.3	Barley	cytosol	42.42	12.46
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	40.91	11.47
HORVU5Hr1G109220.1	Barley	plastid	26.77	6.73
VIT_01s0011g05780.t01	Wine grape	cytosol	2.53	5.32
PGSC0003DMT400075788	Potato	extracellular	0.51	0.28

Protein Annotations

EnsemblPlants:HORVU5Hr1G060590.1	EnsemblPlantsGene:HORVU5Hr1G060590	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:IPR036866	InterPro:Metallo-B-lactamas
InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	PFAM:PF10996	PFAM:PF16661	SUPFAM:SSF56281
UniParc:UPI000B48785C	UniProt:A0A287RF50	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:474659666..474661845

Molecular Weight (calculated)

22649.7 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.140

Length

198 amino acids

Sequence
(BLAST)

001: PIYMTYPTKA LAPLMLEDYR KVMVDHRGEE EQYSYEDIDR CMKKVIPLDL KQTIQVDKDL VIRAYYAGHV LGAAMIYAKV GDAAMVYTGD YNMTPDRHLG
101: AAQIDHLKLD LLITESTYAK TVRDSKHARE REFLKAVHKC VSGGGKVLIP AFALGRAQEL CILLDDYWER MNLKIPIYFS AGLTIQANMY YKMLIGWT

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [cytosol,plasma membrane,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.