Factsheet for HORVU5Hr1G060570.5

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G029140.2
HORVU0Hr1G035930.1
HORVU2Hr1G016100.3
HORVU4Hr1G052840.1
HORVU5Hr1G109220.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	HORVU7Hr1G106340.5	AT1G30460.1	16897494
AT2G01730.1	HORVU0Hr1G029140.2	AT3G06560.1	16897494
AT2G01730.1	HORVU0Hr1G035930.1	AT3G06560.1	16897494
AT2G01730.1	HORVU2Hr1G016100.3	AT3G06560.1	16897494
AT2G01730.1	HORVU4Hr1G052840.1	AT3G06560.1	16897494
AT2G01730.1	HORVU5Hr1G109220.1	AT5G23880.1	16897494
AT2G01730.1	HORVU5Hr1G109220.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G060590.1	Barley	cytosol	35.42	100.0
TraesCS5B01G202500.1	Wheat	cytosol	76.92	93.68
TraesCS5A01G203800.1	Wheat	cytosol	91.95	93.12
TraesCS5D01G210400.1	Wheat	cytosol	91.06	92.21
Os09t0397900-01	Rice	cytosol	80.68	80.68
Zm00001d044213_P001	Maize	cytosol	71.91	72.04
EES01080	Sorghum	cytosol	71.2	71.33
VIT_01s0011g05780.t01	Wine grape	cytosol	11.99	71.28
KRH70353	Soybean	cytosol	61.54	64.66
Solyc04g008030.1.1	Tomato	cytosol	63.33	54.55
Bra026637.1-P	Field mustard	cytosol	58.32	53.01
CDY66642	Canola	cytosol	58.32	53.01
CDY09421	Canola	cytosol	58.32	53.01
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	57.42	52.37
GSMUA_Achr3P07540_001	Banana	cytosol	59.57	50.53
PGSC0003DMT400075788	Potato	extracellular	19.5	30.97
HORVU5Hr1G123370.3	Barley	cytosol	31.13	25.82
HORVU5Hr1G088510.1	Barley	mitochondrion, plastid	27.55	21.81
HORVU5Hr1G109220.1	Barley	plastid	20.57	14.59

Protein Annotations

EnsemblPlants:HORVU5Hr1G060570.5	EnsemblPlantsGene:HORVU5Hr1G060570	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	InterPro:IPR036866
InterPro:Metallo-B-lactamas	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	PFAM:PF07521
PFAM:PF10996	PFAM:PF16661	SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281	UniParc:UPI000B469924
UniProt:A0A287RFF2	MapMan:16.2.1.2.4	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:474529437..474534560

Molecular Weight (calculated)

62159.2 Da

IEP (calculated)

6.576

GRAVY (calculated)

-0.101

Length

559 amino acids

Sequence
(BLAST)

001: MSIDCLVLGA GQEVGKSCVV VTIGGKRVMF DCGMHMGHHD SQRYPDFARI LAAAPGATDF TSAISCVVIT HFHLDHIGAL PYFTEVCGYH GPIYMTYPTK
101: ALAPLMLEDY RKVMVDHRGE EEQYSYEDID RCMKKVIPLD LKQTIQVDKD LVIRAYYAGH VLGAAMIYAK VGDAAMVYTG DYNMTPDRHL GAAQIDHLKL
201: DLLITESTYA KTVRDSKHAR EREFLKAVHK CVSGGGKVLI PAFALGRAQE LCILLDDYWE RMNLKIPIYF SAGLTIQANM YYKMLIGWTS QKIKDSYTVH
301: NPFEFKHVCD FQRSFINDPE PCVLFATPGM ISGGFSLEVF KRWAPSEKNL VTLPGYCVAG TIGHKLMSGK ATRIDLDKET RIDVRCQIHQ LSFSPHTDSK
401: GIMDLTEFLS PSHVILVHGE KPQMAFLKDR IESELGMPCF YPANNETVSI PTAQNLKISA TEKFITNCST AQARDSPRKS NLICGNHLSG ANGDEKLAEG
501: ILLMEKCKAP KILCEDELLQ FLGTEGHSVQ FEPLLRSRIG EAETGIVDDL ASDLAAFST

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.