Factsheet for HORVU2Hr1G016100.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011580.28
HORVU4Hr1G009390.7
HORVU5Hr1G060570.5
HORVU5Hr1G060590.1
HORVU7Hr1G106340.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	HORVU7Hr1G106340.5	AT1G30460.1	16897494
AT3G06560.1	HORVU7Hr1G106340.5	AT1G30460.1	18479511
AT3G06560.1	HORVU5Hr1G060570.5	AT2G01730.1	16897494
AT3G06560.1	HORVU5Hr1G060590.1	AT2G01730.1	16897494
AT3G06560.1	HORVU2Hr1G011580.28	AT5G51660.1	16897494
AT3G06560.1	HORVU4Hr1G009390.7	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G029140.2	Barley	cytosol	82.26	94.99
HORVU0Hr1G035930.1	Barley	cytosol	82.26	94.99
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	76.23	81.12
TraesCS2D01G095000.1	Wheat	cytosol	75.85	75.99
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	76.04	75.89
Os07t0688500-00	Rice	cytosol	60.94	61.64
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	55.09	54.48
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	55.47	53.26
HORVU4Hr1G052840.1	Barley	plastid	48.3	47.23
CDY24682	Canola	nucleus	37.74	40.9
Solyc12g099180.1.1	Tomato	cytosol	33.02	40.23
AT3G06560.1	Thale cress	nucleus	38.11	39.84
CDY05277	Canola	nucleus	37.92	39.18
Bra029588.1-P	Field mustard	nucleus	37.74	38.91
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	40.75	38.78
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	36.42	38.68
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	34.72	38.41
VIT_05s0077g00650.t01	Wine grape	plastid	39.62	37.3
PGSC0003DMT400011757	Potato	nucleus	36.04	34.11
HORVU4Hr1G013750.2	Barley	nucleus	26.6	25.36
HORVU2Hr1G079870.2	Barley	nucleus	24.91	24.49
HORVU7Hr1G088370.13	Barley	nucleus	27.74	20.25
HORVU6Hr1G040920.3	Barley	mitochondrion, nucleus	25.85	20.06
HORVU4Hr1G011370.8	Barley	nucleus	24.91	17.46
HORVU2Hr1G105500.3	Barley	cytosol	11.32	10.83

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	UniProt:A0A287H640	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	EnsemblPlantsGene:HORVU2Hr1G016100	EnsemblPlants:HORVU2Hr1G016100.3
InterPro:NuclTrfase_I-like_C	PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	UniParc:UPI000B46873A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:36438329..36443231

Molecular Weight (calculated)

54241.4 Da

IEP (calculated)

7.191

GRAVY (calculated)

0.013

Length

530 amino acids

Sequence
(BLAST)

001: GGGLGGGGGA GGGGGLGGGI GHGGGLGGGI GKGGGFGGGI GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXIGCCA RVRPAGVPDF LCFRCLLAQI
101: VTDWAKGVAS EERVPPRRVT ATVLTYGSYT LGAHGPESDI DALCVGPCIA NLPHHFFVVL RQILKCRPEV SGLQTVENAK VPLMRFRFSG ISVDLTYAQL
201: PVLDAVQAIN TSSPQYLRRL DSRSWKSLSG VRVNEQIVQL VPNQEKFQIL LRCIKLWARR RGLHCHLLGS FAGIHLAILA AYVCQRFPNA TANGLFTMFF
301: GIFAHWPWHI PVDLHGQPTN CRHSDGCLMP IVMPCTPPEL CASNMTEGTF RKIREELMRG YVLTKDLGSH DFEWAWIFEP FPYSTTYGQF LRIALCAPTS
401: EELHDWIGWV KSRFPYLILK LENIGIECDP NSSQEVDHTV IKPNTVYHWG LIPLSDVYLD PSSLKEDFMK YVINDVYGKV KCTDSELTIS IVDASELPKS
501: MSNDSFYSQQ HLHEYGVGYQ AAADCWSAFG

Best Arabidopsis Sequence Match ( AT2G25850.1 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.