Factsheet for VIT_05s0077g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05780.t01
VIT_10s0003g04600.t01
VIT_11s0037g00130.t01
VIT_16s0022g01860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	VIT_10s0003g04600.t01	AT1G30460.1	16897494
AT3G06560.1	VIT_10s0003g04600.t01	AT1G30460.1	18479511
AT3G06560.1	VIT_01s0011g05780.t01	AT2G01730.1	16897494
AT3G06560.1	VIT_16s0022g01860.t01	AT5G51660.1	16897494
AT3G06560.1	VIT_11s0037g00130.t01	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	51.87	58.52
AT3G06560.1	Thale cress	nucleus	52.04	57.79
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	48.85	57.41
Solyc12g099180.1.1	Tomato	cytosol	44.05	57.01
CDY24682	Canola	nucleus	49.38	56.85
CDY05277	Canola	nucleus	50.98	55.95
Bra029588.1-P	Field mustard	nucleus	49.91	54.67
PGSC0003DMT400011757	Potato	nucleus	53.46	53.75
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	50.27	50.81
HORVU0Hr1G035930.1	Barley	cytosol	39.25	48.15
HORVU0Hr1G029140.2	Barley	cytosol	39.25	48.15
VIT_13s0073g00320.t01	Wine grape	cytosol	4.97	47.46
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	41.74	47.19
Os07t0688500-00	Rice	cytosol	42.45	45.61
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	11.72	45.52
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	42.1	44.63
TraesCS2D01G095000.1	Wheat	cytosol	41.92	44.61
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	39.79	44.09
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	41.56	43.66
Os03t0313300-01	Rice	mitochondrion	41.92	43.22
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	42.1	42.93
TraesCS4A01G123900.1	Wheat	nucleus	41.03	42.78
TraesCS4D01G182000.1	Wheat	nucleus	40.67	42.41
TraesCS4B01G180500.1	Wheat	nucleus	40.67	42.41
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	40.67	42.41
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	11.9	42.14
HORVU4Hr1G052840.1	Barley	plastid	40.32	41.88
HORVU2Hr1G016100.3	Barley	cytosol	37.3	39.62
OQU92698	Sorghum	cytosol, plasma membrane, plastid	40.67	37.85
VIT_11s0016g03040.t01	Wine grape	nucleus	31.26	29.43
VIT_17s0000g03120.t01	Wine grape	cytosol, nucleus, plastid	30.02	25.96
VIT_01s0011g04320.t01	Wine grape	nucleus	31.62	24.86
VIT_09s0002g03380.t01	Wine grape	cytosol	32.68	24.34

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:100267147	wikigene:100267147	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590
EMBL:AM481722	ProteinID:CAN79659	ProteinID:CAN79659.1	ProteinID:CBI22855	ProteinID:CBI22855.3	UniProt:D7SYI5
EMBL:FN595246	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	GO:GO:0046872	EntrezGene:LOC100267147	wikigene:LOC100267147	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
TMHMM:TMhelix	UniParc:UPI00015CBFB4	ArrayExpress:VIT_05s0077g00650	EnsemblPlantsGene:VIT_05s0077g00650	EnsemblPlants:VIT_05s0077g00650.t01	unigene:Vvi.23628
RefSeq:XP_002279844	RefSeq:XP_002279844.1	RefSeq:XP_019075718.1	:	:	:

Description

No Description!

Coordinates

chr5:+:455224..464808

Molecular Weight (calculated)

63595.7 Da

IEP (calculated)

8.515

GRAVY (calculated)

-0.155

Length

563 amino acids

Sequence
(BLAST)

001: MAHAHRSQNS VALVHSQPLI HPQPPVVNAP VGFVPRPVGV INPSFGPVPP FDPASLPQPG FVLNPAVLVR MEHRRSISLL QFMSNEGLIP SPEEELKRKN
101: VIEKLKEIVL TWVKRVAWQR QRPKQQIAVT SATILTYGSY GLGVHGPESD IDALCVGPFF ASMADDFFIV LRNMLESRPE VSEIHCVKDA KVPLMRFKFD
201: GISVDLPYAQ LKLLYVPENL NVLNPYFLRN IDETSWKSLS GVRANECILQ LVPNVENFQS ILRCIKLWAK RRGVYGNLFG YFGGVHLAIL AAFVCQKNPH
301: ANLNVLMSSF FKTFSGWPWP TPVALEDGRL PTGGTRETRA LMPIQLPCSP YGYCHSNITK STFYRITTEL TLGHALTRDL LRLDFDWNDI FEPFCYSKKY
401: SRFIKIYLSS SNQDELGDWV GWVKSRFRFL LAKVEEVQGL CDPNPTEFID PDAGGPNVVF FWGVQPGRIN FSDIDVVEDD FMQNINNGGY QGPPGKMNLS
501: VIPTSQLPGY AQLDTGSRNR TKACWRMFNY HQPRVPVFSQ HLPLYFVGYA ATDKDAKRLD AWS

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.