Factsheet for VIT_01s0011g05780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0077g00650.t01
VIT_10s0003g04600.t01
VIT_16s0050g00590.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	VIT_10s0003g04600.t01	AT1G30460.1	16897494
AT2G01730.1	VIT_05s0077g00650.t01	AT3G06560.1	16897494
AT2G01730.1	VIT_16s0050g00590.t01	AT5G23880.1	16897494
AT2G01730.1	VIT_16s0050g00590.t01	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00170.t01	Wine grape	plastid	39.36	20.11
KRH70353	Soybean	cytosol	78.72	13.91
EES01080	Sorghum	cytosol	72.34	12.19
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	78.72	12.07
Zm00001d044213_P001	Maize	cytosol	71.28	12.01
HORVU5Hr1G060570.5	Barley	cytosol	71.28	11.99
TraesCS5D01G210400.1	Wheat	cytosol	70.21	11.96
Os09t0397900-01	Rice	cytosol	69.15	11.63
TraesCS5A01G203800.1	Wheat	cytosol	68.09	11.59
Solyc04g008030.1.1	Tomato	cytosol	79.79	11.56
Bra026637.1-P	Field mustard	cytosol	68.09	10.41
CDY66642	Canola	cytosol	68.09	10.41
CDY09421	Canola	cytosol	68.09	10.41
GSMUA_Achr3P07540_001	Banana	cytosol	57.45	8.19
VIT_12s0035g00030.t01	Wine grape	cytosol, plasma membrane, plastid	40.43	5.48
VIT_12s0035g00190.t01	Wine grape	cytosol	40.43	5.48
VIT_16s0050g00590.t01	Wine grape	cytosol	22.34	2.84
HORVU5Hr1G060590.1	Barley	cytosol	5.32	2.53
PGSC0003DMT400075788	Potato	extracellular	0.0	0.0
TraesCS5B01G202500.1	Wheat	cytosol	0.0	0.0
VIT_12s0035g00160.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_01s0011g05780	EMBL:FN595752	EnsemblPlants:VIT_01s0011g05780.t01	EnsemblPlantsGene:VIT_01s0011g05780	Gene3D:3.60.15.10	InterPro:IPR036866
InterPro:Metallo-B-lactamas	InterPro:RibonucZ/Hydroxyglut_hydro	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	PFAM:PF00753	ProteinID:CCB50783
ProteinID:CCB50783.1	SUPFAM:SSF56281	UniParc:UPI00021081CE	UniProt:F6HFD4	MapMan:35.1	:

Description

No Description!

Coordinates

chr1:-:5548157..5552540

Molecular Weight (calculated)

10379.8 Da

IEP (calculated)

6.325

GRAVY (calculated)

0.421

Length

94 amino acids

Sequence
(BLAST)

1: MAIECLVLGA GQEVGKSCAV VTINGKRIMF DCGMHMGYLD HRRFPDFSLI SKSADFNTAI DCIVITHFHL DHVGALPYFT EVCGYSGPIY MTVM

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [cytosol,plasma membrane,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.