Factsheet for TraesCS5D01G210400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G096500.1
TraesCS2B01G112000.1
TraesCS2D01G095000.1
TraesCS4A01G123900.1
TraesCS4B01G180500.1
TraesCS4D01G182000.1
TraesCS5A01G453700.5
TraesCS5B01G462500.2
TraesCS5D01G464200.1
TraesCS7A01G461800.1
TraesCS7B01G363200.2
TraesCS7D01G450100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	TraesCS7A01G461800.1	AT1G30460.1	16897494
AT2G01730.1	TraesCS7B01G363200.2	AT1G30460.1	16897494
AT2G01730.1	TraesCS7D01G450100.1	AT1G30460.1	16897494
AT2G01730.1	TraesCS2A01G096500.1	AT3G06560.1	16897494
AT2G01730.1	TraesCS2B01G112000.1	AT3G06560.1	16897494
AT2G01730.1	TraesCS2D01G095000.1	AT3G06560.1	16897494
AT2G01730.1	TraesCS4A01G123900.1	AT3G06560.1	16897494
AT2G01730.1	TraesCS4B01G180500.1	AT3G06560.1	16897494
AT2G01730.1	TraesCS4D01G182000.1	AT3G06560.1	16897494
AT2G01730.1	TraesCS5A01G453700.5	AT5G23880.1	16897494
AT2G01730.1	TraesCS5B01G462500.2	AT5G23880.1	16897494
AT2G01730.1	TraesCS5D01G464200.1	AT5G23880.1	16897494
AT2G01730.1	TraesCS5A01G453700.5	AT5G23880.1	18479511
AT2G01730.1	TraesCS5B01G462500.2	AT5G23880.1	18479511
AT2G01730.1	TraesCS5D01G464200.1	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G203800.1	Wheat	cytosol	98.01	98.01
TraesCS5B01G202500.1	Wheat	cytosol	81.16	97.6
HORVU5Hr1G060590.1	Barley	cytosol	34.96	97.47
HORVU5Hr1G060570.5	Barley	cytosol	92.21	91.06
Os09t0397900-01	Rice	cytosol	81.34	80.32
Zm00001d044213_P001	Maize	cytosol	72.28	71.51
EES01080	Sorghum	cytosol	71.38	70.61
VIT_01s0011g05780.t01	Wine grape	cytosol	11.96	70.21
KRH70353	Soybean	cytosol	62.32	64.66
Solyc04g008030.1.1	Tomato	cytosol	65.04	55.32
CDY66642	Canola	cytosol	59.24	53.17
CDY09421	Canola	cytosol	59.24	53.17
Bra026637.1-P	Field mustard	cytosol	59.24	53.17
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	58.88	53.02
GSMUA_Achr3P07540_001	Banana	cytosol	60.69	50.83
PGSC0003DMT400075788	Potato	extracellular	20.29	31.82
TraesCS5D01G555600.1	Wheat	cytosol	31.52	25.14
TraesCS5D01G367600.1	Wheat	cytosol	29.89	23.81
TraesCS5D01G464200.1	Wheat	cytosol	19.2	14.36

Protein Annotations

MapMan:16.2.1.2.4	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0010197
GO:GO:0016043	GO:GO:0030154	InterPro:IPR036866	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996
PFAM:PF16661	PANTHER:PTHR11203	PANTHER:PTHR11203:SF37	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849
SMART:SM01027	SUPFAM:SSF56281	EnsemblPlantsGene:TraesCS5D01G210400	EnsemblPlants:TraesCS5D01G210400.1	TIGR:cd16291	:

Description

No Description!

Coordinates

chr5D:-:318875357..318880210

Molecular Weight (calculated)

61479.2 Da

IEP (calculated)

6.470

GRAVY (calculated)

-0.136

Length

552 amino acids

Sequence
(BLAST)

001: MTIDCLVLGA GQEVGKSCVV VTIGGKRVMF DCGMHMGHHD HQRYPDFARI LAATPGADFT SAISCVVITH FHLDHIGALP YFTEVCGYHG PIYMTYPTKA
101: LAPLMLEDYR KVMVDHRGEE EQYSYEDIQN CMKKVIPLDL KQTIQVDREL VIRAYYAGHV LGAAMIYAKV GDAALVYTGD YNMTPDRHLG AAQIDHLKLD
201: LLITESTYAK TVRDSKHARE REFLKAVHKC VSGGGKVLIP AFALGRAQEL CILLDDYWER MNLKIPIYFS AGLTIQANMY YKMLIGWTSQ KIKDSYTVHN
301: PFDFKHVCDF QRSFINDPGP CVLFATPGMI SGGFSLEVFK RWAPSEKNLV TLPGYCVAGT IGHKLMSGKP TRIDLDKETH IDVRCQIHQL SFSPHTDSKG
401: IMDLTEFLSP SHVILVHGEK PQMSFLKERI ESELGMPCYY PANNETVSIP TTKNLKISAT DKFIASCSTS QARDSTQKSN LICGNHLSGA NGDEKLAEGI
501: LLMEKSKDAK ILCEDELLQL LGAEGHSLQF EPLLHSRIGE AETDIVDDLA SE

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.