Factsheet for Bra026637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009712.1-P
Bra010767.1-P
Bra014881.1-P
Bra029588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01730.1	Bra010767.1-P	AT1G30460.1	16897494
AT2G01730.1	Bra014881.1-P	AT1G30460.1	16897494
AT2G01730.1	Bra029588.1-P	AT3G06560.1	16897494
AT2G01730.1	Bra009712.1-P	AT5G23880.1	16897494
AT2G01730.1	Bra009712.1-P	AT5G23880.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09421	Canola	cytosol	99.67	99.67
HORVU5Hr1G060590.1	Barley	cytosol	25.69	79.8
AT2G01730.1	Thale cress	cytoskeleton, cytosol, plasma membrane	76.59	76.84
VIT_01s0011g05780.t01	Wine grape	cytosol	10.41	68.09
KRH70353	Soybean	cytosol	56.59	65.41
TraesCS5D01G210400.1	Wheat	cytosol	53.17	59.24
TraesCS5A01G203800.1	Wheat	cytosol	53.17	59.24
HORVU5Hr1G060570.5	Barley	cytosol	53.01	58.32
Zm00001d044213_P001	Maize	cytosol	52.85	58.24
Os09t0397900-01	Rice	cytosol	52.68	57.96
EES01080	Sorghum	cytosol	52.52	57.89
TraesCS5B01G202500.1	Wheat	cytosol	42.93	57.52
Solyc04g008030.1.1	Tomato	cytosol	56.42	53.47
GSMUA_Achr3P07540_001	Banana	cytosol	49.27	45.98
PGSC0003DMT400075788	Potato	extracellular	17.24	30.11
Bra031460.1-P	Field mustard	cytosol	29.59	26.22
Bra009712.1-P	Field mustard	cytosol	20.16	16.78

Protein Annotations

MapMan:16.2.1.2.4	Gene3D:3.40.50.10890	Gene3D:3.60.15.10	InterPro:Beta_Casp	EnsemblPlantsGene:Bra026637	EnsemblPlants:Bra026637.1
EnsemblPlants:Bra026637.1-P	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0030154	InterPro:IPR036866
UniProt:M4ECX7	InterPro:Metallo-B-lactamas	PFAM:PF07521	PFAM:PF10996	PFAM:PF16661	PANTHER:PTHR11203
PANTHER:PTHR11203:SF37	InterPro:RMMBL	InterPro:RibonucZ/Hydroxyglut_hydro	SMART:SM00849	SMART:SM01027	SUPFAM:SSF56281
UniParc:UPI0002546A9C	:	:	:	:	:

Description

AT2G01730 (E=0.0) ATCPSF73-II, EDA26 | ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II); catalytic/ protein binding

Coordinates

chrA02:-:21001822..21004819

Molecular Weight (calculated)

68098.5 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.043

Length

615 amino acids

Sequence
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPDFSIL SKSGDFDNTI SCLIITHFHM DHVGALPYFT EVCGYNGPVY MSYPTKALSP
101: LMLEDYRRIM VDRRGEEELF TSAHIASCMN KVIPLDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKVGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTTR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHVTHNPFD
301: FKNVKDFYRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMSGKPTTV DLYNGTKVDV RCKIHQVAFS PHTDAKGIMD
401: LTKFLSPKNI VLVHGEKPSM MSLKDKITSE LGIPCFVPAN GETVSVASTT FVKANASDMF LKICSNPNFR FSNSSTQLRV TDQRTADGVL VIEKSKKAKI
501: VHQDEVSEVL HEKDHVVSLA YCCPVKVKGE SDDVGLIKQL SEKISETVSC ADEIHESETC LQVGSFKGSL CLKEECVHRR GISSSCSEVK FLCCNWSVAD
601: LELGWGIINA MKQNL

Best Arabidopsis Sequence Match ( AT2G01730.1 )
(BLAST)

001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH

Arabidopsis Description

CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.