Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075788 | Potato | extracellular | 48.38 | 89.2 |
| HORVU5Hr1G060590.1 | Barley | cytosol | 25.27 | 82.83 |
| VIT_01s0011g05780.t01 | Wine grape | cytosol | 11.56 | 79.79 |
| KRH70353 | Soybean | cytosol | 56.24 | 68.61 |
| TraesCS5D01G210400.1 | Wheat | cytosol | 55.32 | 65.04 |
| TraesCS5A01G203800.1 | Wheat | cytosol | 55.01 | 64.67 |
| EES01080 | Sorghum | cytosol | 55.16 | 64.16 |
| Os09t0397900-01 | Rice | cytosol | 55.01 | 63.86 |
| HORVU5Hr1G060570.5 | Barley | cytosol | 54.55 | 63.33 |
| Zm00001d044213_P001 | Maize | cytosol | 54.08 | 62.9 |
| TraesCS5B01G202500.1 | Wheat | cytosol | 43.91 | 62.09 |
| AT2G01730.1 | Thale cress | cytoskeleton, cytosol, plasma membrane | 57.32 | 60.69 |
| CDY66642 | Canola | cytosol | 53.47 | 56.42 |
| CDY09421 | Canola | cytosol | 53.47 | 56.42 |
| Bra026637.1-P | Field mustard | cytosol | 53.47 | 56.42 |
| GSMUA_Achr3P07540_001 | Banana | cytosol | 50.23 | 49.47 |
| Solyc07g049480.2.1 | Tomato | nucleus | 28.35 | 25.17 |
| Solyc03g025540.2.1 | Tomato | nucleus | 16.49 | 14.48 |
Protein Annotations
| MapMan:16.2.1.2.4 | Gene3D:3.40.50.10890 | Gene3D:3.60.15.10 | InterPro:Beta_Casp | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010197 |
| GO:GO:0016043 | GO:GO:0030154 | InterPro:IPR036866 | UniProt:K4BNV9 | InterPro:Metallo-B-lactamas | PFAM:PF07521 |
| PFAM:PF10996 | PFAM:PF16661 | PANTHER:PTHR11203 | PANTHER:PTHR11203:SF37 | InterPro:RMMBL | InterPro:RibonucZ/Hydroxyglut_hydro |
| SMART:SM00849 | SMART:SM01027 | SUPFAM:SSF56281 | EnsemblPlantsGene:Solyc04g008030.1 | EnsemblPlants:Solyc04g008030.1.1 | UniParc:UPI0002766D81 |
Description
Cleavage and polyadenylation specificity factor subunit 3-II [Source:Projected from Arabidopsis thaliana (AT2G01730) UniProtKB/Swiss-Prot;Acc:Q8GUU3]
Coordinates
chr4:-:1682464..1697247
Molecular Weight (calculated)
73152.4 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.169
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIDCLVLGA GQEVGKSCVV VTINGKRIMF DCGMHMGHSD HQRYPDFSLI SESGDFDNAL SCIIITHFHL DHIGALPYFT EVCGYNGPIY MTYPTKALAP
101: LMLEDYRRVL VDRRGEKEQF SSENIADCMK KVTAVDLKQT MLVDRDLQIR AYYAGHVLGA AMFYAKVGDA AMVYTGDYNM TADRHLGAAQ IDRLQLDLVI
201: TESTYATTIR DSKYVREREF LEAIHKCVDS GGKVLIPAFA LGRAQELCML LDDYWERMNL KVPIYFSAGL TIQANMYYKV LINWASQKVK NLSATRNAFD
301: FKNVHSFERS MINAPGPCVL FATPGMLSGG FSLEVFKQWA PCEQNLIVLP GYCLAETVGH KLMRAKPPAR IDVDKSTQID VRCQIHQLSF SPHTDSKGIM
401: DLIRFLSPKN VILVHGEKPK MASLKERIES DLRIPCYYPA NNESQRIETT HYIKAEASKS FLQSSLSPNF KFLKTISRAD TGFVLNERAE SCVQVCDDRV
501: AEGAVIMQKD QHPKIVHQNE LMDILEAENH KVQVAYCCPV CVPDEPKNVA LSPGEDMHPV LDKCSLLHLL YTKLSNGFQD VTILNDGDRL QIQSFTVSPC
601: LKEKCPHRIH VNPDSTSEAV NFCCTWSMED EKLAWRVISS MKNLELKTR
101: LMLEDYRRVL VDRRGEKEQF SSENIADCMK KVTAVDLKQT MLVDRDLQIR AYYAGHVLGA AMFYAKVGDA AMVYTGDYNM TADRHLGAAQ IDRLQLDLVI
201: TESTYATTIR DSKYVREREF LEAIHKCVDS GGKVLIPAFA LGRAQELCML LDDYWERMNL KVPIYFSAGL TIQANMYYKV LINWASQKVK NLSATRNAFD
301: FKNVHSFERS MINAPGPCVL FATPGMLSGG FSLEVFKQWA PCEQNLIVLP GYCLAETVGH KLMRAKPPAR IDVDKSTQID VRCQIHQLSF SPHTDSKGIM
401: DLIRFLSPKN VILVHGEKPK MASLKERIES DLRIPCYYPA NNESQRIETT HYIKAEASKS FLQSSLSPNF KFLKTISRAD TGFVLNERAE SCVQVCDDRV
501: AEGAVIMQKD QHPKIVHQNE LMDILEAENH KVQVAYCCPV CVPDEPKNVA LSPGEDMHPV LDKCSLLHLL YTKLSNGFQD VTILNDGDRL QIQSFTVSPC
601: LKEKCPHRIH VNPDSTSEAV NFCCTWSMED EKLAWRVISS MKNLELKTR
001: MAIDCLVLGA GQEIGKSCVV VTINGKKIMF DCGMHMGCDD HNRYPNFSLI SKSGDFDNAI SCIIITHFHM DHVGALPYFT EVCGYNGPIY MSYPTKALSP
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH
101: LMLEDYRRVM VDRRGEEELF TTTHIANCMK KVIAIDLKQT IQVDEDLQIR AYYAGHVLGA VMVYAKMGDA AIVYTGDYNM TTDRHLGAAK IDRLQLDLLI
201: SESTYATTIR GSKYPREREF LQAVHKCVAG GGKALIPSFA LGRAQELCML LDDYWERMNI KVPIYFSSGL TIQANMYYKM LISWTSQNVK EKHNTHNPFD
301: FKNVKDFDRS LIHAPGPCVL FATPGMLCAG FSLEVFKHWA PSPLNLVALP GYSVAGTVGH KLMAGKPTTV DLYNGTKVDV RCKVHQVAFS PHTDAKGIMD
401: LTKFLSPKNV VLVHGEKPSM MILKEKITSE LDIPCFVPAN GETVSFASTT YIKANASDMF LKSCSNPNFK FSNSTQLRVT DHRTADGVLV IEKSKKAKIV
501: HQDEISEVLH EKNHVVSLAH CCPVKVKGES EDDDVDLIKQ LSAKILKTVS GAQIHESENC LQVASFKGSL CLKDKCMHRS SSSSSEAVFL CCNWSIADLE
601: LGWEIINAIK LNH
Arabidopsis Description
CPSF73-IICleavage and polyadenylation specificity factor subunit 3-II [Source:UniProtKB/Swiss-Prot;Acc:Q8GUU3]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]
SUBAcon: [plasma membrane,cytoskeleton,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.