Factsheet for Solyc12g099180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021760.2.1
Solyc02g070240.2.1
Solyc03g007100.2.1
Solyc04g008030.1.1
Solyc07g005320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Solyc02g021760.2.1	AT1G30460.1	16897494
AT3G06560.1	Solyc02g070240.2.1	AT1G30460.1	16897494
AT3G06560.1	Solyc02g021760.2.1	AT1G30460.1	18479511
AT3G06560.1	Solyc02g070240.2.1	AT1G30460.1	18479511
AT3G06560.1	Solyc04g008030.1.1	AT2G01730.1	16897494
AT3G06560.1	Solyc03g007100.2.1	AT5G51660.1	16897494
AT3G06560.1	Solyc07g005320.2.1	AT5G58040.1	18479511

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011757	Potato	nucleus	96.78	75.18
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	64.83	58.87
Zm00001d021105_P001	Maize	endoplasmic reticulum, plasma membrane	15.63	46.9
AT3G06560.1	Thale cress	nucleus	53.79	46.15
CDY24682	Canola	nucleus	49.89	44.38
CDY05277	Canola	nucleus	52.18	44.25
VIT_05s0077g00650.t01	Wine grape	plastid	57.01	44.05
Bra029588.1-P	Field mustard	nucleus	51.72	43.77
Zm00001d012429_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	15.86	43.4
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	51.26	40.04
HORVU0Hr1G029140.2	Barley	cytosol	40.92	38.78
HORVU0Hr1G035930.1	Barley	cytosol	40.92	38.78
Zm00001d047607_P001	Maize	cytosol, plasma membrane, plastid	42.99	36.81
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	41.84	36.55
Os07t0688500-00	Rice	cytosol	43.45	36.07
Zm00001d028920_P004	Maize	cytosol, plasma membrane, plastid	43.68	35.19
TraesCS4A01G123900.1	Wheat	nucleus	43.68	35.19
TraesCS4B01G180500.1	Wheat	nucleus	43.68	35.19
TraesCS4D01G182000.1	Wheat	nucleus	43.45	35.0
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	44.37	34.96
TraesCS2D01G095000.1	Wheat	cytosol	42.3	34.78
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	42.53	34.51
HORVU4Hr1G052840.1	Barley	plastid	42.76	34.32
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	41.38	33.9
Os03t0313300-01	Rice	mitochondrion	42.53	33.88
HORVU2Hr1G016100.3	Barley	cytosol	40.23	33.02
OQU92698	Sorghum	cytosol, plasma membrane, plastid	43.91	31.57
Solyc06g066470.2.1	Tomato	nucleus	31.72	29.18
Solyc12g095890.1.1	Tomato	nucleus	32.41	23.23
Solyc05g008630.2.1	Tomato	nucleus	34.02	21.7
Solyc08g066200.2.1	Tomato	nucleus	33.1	18.3

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123
GO:GO:0043631	UniProt:K4DHT9	InterPro:NuclTrfase_I-like_C	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:Solyc12g099180.1
EnsemblPlants:Solyc12g099180.1.1	TMHMM:TMhelix	UniParc:UPI000276A53C	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:66420210..66423057

Molecular Weight (calculated)

49558.3 Da

IEP (calculated)

9.010

GRAVY (calculated)

-0.093

Length

435 amino acids

Sequence
(BLAST)

001: MKRRNAIDKL KKIVVEWVKT VTYQRGLPKK YLKFASGTIL TYGSYGLGVY NSESDIDALC VGPYFATIAE DFFIVLHNML ASRPEVSEIH CVKDAKVPLM
101: RFKFDGISID LPYARLKVIS IPEVFQAVLR CIKLWAKRRG VYANLLGFFG GIHLAVLSAF ICQRHPSASL SALILLLFKT FALWPWPTPV ILQDQIARPF
201: IPTHDKVSWM PIQLPCSPYE FCHSNITRST FYKIRTEFLR GHMLTKDMLS PDFDWNILFE PFPYARKYGL FVKIFLSACD KDELGDWVGW VKSRFRCLLV
301: KLEELLGFCD PNPTEYVDTD ASEPNVIFYW GLPTGRADLT NADLVEEYFL KSIDHGLNQV STGTMKLSIV KAYQLPKKAD QLIAPERKNS KPCWRVVDGN
401: RKKTPAQPKY KPHCAESAGD YLPTNENPEF PSAGG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.