Factsheet for Os07t0688500-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0252200-01
Os06t0677700-00
Os09t0397900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06560.1	Os06t0677700-00	AT1G30460.1	16897494
AT3G06560.1	Os06t0677700-00	AT1G30460.1	18479511
AT3G06560.1	Os09t0397900-01	AT2G01730.1	16897494
AT3G06560.1	Os04t0252200-01	AT5G51660.1	16897494

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G029140.2	Barley	cytosol	64.12	73.2
HORVU0Hr1G035930.1	Barley	cytosol	64.12	73.2
TraesCS2A01G096500.1	Wheat	cytosol, mitochondrion, nucleus, vacuole	68.7	72.29
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	69.27	68.36
TraesCS2D01G095000.1	Wheat	cytosol	67.94	67.3
KXG36988	Sorghum	endoplasmic reticulum, plasma membrane	66.22	62.86
Zm00001d022535_P004	Maize	endoplasmic reticulum, plasma membrane	63.74	62.31
HORVU2Hr1G016100.3	Barley	cytosol	61.64	60.94
Os03t0313300-01	Rice	mitochondrion	59.54	57.14
GSMUA_Achr8P29920_001	Banana	cytosol, golgi, plastid	51.34	48.29
PGSC0003DMT400074732	Potato	cytosol, peroxisome, plastid	43.32	45.49
Solyc01g058260.2.1	Tomato	cytosol, peroxisome, plastid	40.84	44.68
CDY24682	Canola	nucleus	40.65	43.56
Solyc12g099180.1.1	Tomato	cytosol	36.07	43.45
CDY05277	Canola	nucleus	41.6	42.5
VIT_05s0077g00650.t01	Wine grape	plastid	45.61	42.45
AT3G06560.1	Thale cress	nucleus	40.84	42.21
Bra029588.1-P	Field mustard	nucleus	40.84	41.63
Os06t0558766-00	Rice	cytosol	17.56	39.66
PGSC0003DMT400011757	Potato	nucleus	41.98	39.29
Os01t0702900-01	Rice	extracellular	8.02	32.56
Os04t0588350-00	Rice	nucleus, plastid	29.77	28.06
Os06t0319600-01	Rice	cytosol	6.3	25.58
Os02t0227400-01	Rice	extracellular	29.77	25.57
Os06t0558700-01	Rice	nucleus	3.44	5.47

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	EntrezGene:4344356	UniProt:A0A0N7KP35	ProteinID:BAT03314.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006378
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	EnsemblPlantsGene:Os07g0688500	EnsemblPlants:Os07t0688500-00
PFAM:PF01909	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF20	InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase
InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	TMHMM:TMhelix	UniParc:UPI0001C7CF99
RefSeq:XP_015645249.1	SEG:seg	:	:	:	:

Description

Similar to Poly. (Os07t0688500-00)

Coordinates

chr7:+:29254446..29259496

Molecular Weight (calculated)

59322.8 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.126

Length

524 amino acids

Sequence
(BLAST)

001: MASARATDPL ASRDPPTLPS YLPPPPPPPL PSPSPHHRLL PAPMAPILLH LHPAFLAQMD SRRTTSLLQF LKDEGGIPSP EADKKREQVI RKLNKIVMDW
101: AKVVAYEQRV PPRRATATVL TYGSYTLGAH GPESDIDALC VGPCIATLQY HFFIVLRQIL EDRPEVSELQ TVESAKVPLM RFRFSGISVD FTYAQLPVID
201: ASEAIITSNP HLLQKLDSLS WRSLSGVRVN EQIVQLVPNA QKFQILLRCI KLWAKRRGIH CHLLGFFAGI HLAILAAYVC QRYPYGTING LFTIFFDIFA
301: HWNWQIPVSL HGQPTNCRRP DGSFMPILLP CTPPEFCTSN MTKGTFKKIR EELMRGYALT KEPWRHDFEW VWLFAPFPYA TKYEEFLRIA LCAPTSEELR
401: DWAGWVKSRF NLILKLESIG VECDPDSTEE VDHTVFEPSI VCHWGLIYKT STHIDISSLG EDFMKDVIND VYGKVKGTHS KLTMSIVRSS QLPKSLYSHS
501: VYTPYIPQYM LGYQTPTDYS GAAG

Best Arabidopsis Sequence Match ( AT3G06560.1 )
(BLAST)

001: MKKGGGRNKG FPQDDESSIS LRQLMVNEGL IPSLEDEVKR RGVINQLRKI VVRWVKNVAW QHRLPQNQID ATNATILPYG SYGLGVYGSE SDIDALCIGP
101: FFASIAEDFF ISLRDMLKSR REVSELHCVK DAKVPLIRFK FDGILVDLPY AQLRVLSIPN NVDVLNPFFL RDIDETSWKI LSGVRANKCI LQLVPSLELF
201: QSLLRCVKLW AKRRGVYGNL NGFLGGVHMA ILAAFVCGYQ PNATLSSLLA NFFYTFAHWQ WPTPVVLLED TYPSTGAPPG LMPIQLPCGS HQYCNSTITR
301: STFYKIVAEF LLGHNLTKDY LKLNFSWKDL FELYPYANTY TWFTKIHLSA ANQEDLSDWV GWVKSRFRCL LIKIEEVYGI CDPNPTEYVE TYTKQPNIVF
401: YWGLQLRTIN VSDIESVKID FLKNVNSGSF RGTVGRIQLT LVKASQLPKN GECGSNNRSK KVTKTCWRIR EDKQCNNVPV YSKHLPGYVV GYQKMVNREA
501: DGMEVKC

Arabidopsis Description

PAPS3Nuclear poly(A) polymerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56XM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.