Factsheet for Os06t0558700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0227400-01	Rice	extracellular	25.53	13.77
Os04t0588350-00	Rice	nucleus, plastid	14.89	8.81
Os03t0313300-01	Rice	mitochondrion	5.78	3.48
Os07t0688500-00	Rice	cytosol	5.47	3.44
Os06t0319600-01	Rice	cytosol	0.91	2.33
CDY52248	Canola	cytosol, nucleus, plastid	0.0	0.0
CDY65137	Canola	cytosol, nucleus, plastid	0.0	0.0
Os01t0702900-01	Rice	extracellular	0.0	0.0
Os06t0558766-00	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	UniProt:A0A0P0WY39	ProteinID:BAS98237.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	EnsemblPlantsGene:Os06g0558700	EnsemblPlants:Os06t0558700-01
PFAM:PF04926	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolyA_polymerase	SUPFAM:SSF55003
UniParc:UPI0000E12856	:	:	:	:	:

Description

Poly(A) polymerase, RNA-binding region domain containing protein. (Os06t0558700-01)

Coordinates

chr6:-:21343410..21345112

Molecular Weight (calculated)

35048.8 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.636

Length

329 amino acids

Sequence
(BLAST)

001: GMLQCHPYPH EYADPSRQCA HCAFFMGLSR KEGAKIQEGQ QFDIRGTVDE FRHDIGMYGY WRPGMELAVS HVRRKQIPSY VFPEGYKRPR PSRHINHPQQ
101: SNKNDVEDGT ANRSPDGQPK RKHDTAGVYD SEPGRSVKRA SISPSISPVH QKTSSPPSGN IADASGASGG SPVSLANGNL EQANCLNSPL ASEKSLDSVT
201: SGSKCVGVEA VCPSDATKEH DNCGSNMKNC TTTTVAVSLK RVAEKVVSEL VGSESLGGNK SGELLERAED MGSALVENVH FGGNGVVQTG LPEELEPNNG
301: IEVVSKAHAG VNSDAPQKAS LRVSLTSTA

Best Arabidopsis Sequence Match ( AT4G32850.1 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.