Factsheet for Os04t0588350-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G342300.1	Wheat	nucleus	69.96	73.95
HORVU2Hr1G079870.2	Barley	nucleus	71.22	73.47
TraesCS2B01G340000.1	Wheat	nucleus	69.42	73.38
TraesCS2D01G320700.1	Wheat	nucleus	69.42	72.56
TraesCS2D01G451500.1	Wheat	nucleus	70.68	71.72
TraesCS2D01G319900.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	58.09	71.62
TraesCSU01G155200.1	Wheat	nucleus	69.42	70.96
TraesCS2A01G451700.1	Wheat	nucleus	69.42	70.96
TraesCS2A01G451800.1	Wheat	nucleus	69.42	70.7
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	70.32	69.57
HORVU4Hr1G013750.2	Barley	nucleus	68.53	68.53
TraesCS2B01G473400.1	Wheat	plastid	44.96	68.49
KXG27007	Sorghum	nucleus	66.37	67.58
Os01t0702900-01	Rice	extracellular	15.65	67.44
Zm00001d002505_P001	Maize	nucleus	63.31	63.77
Os06t0558766-00	Rice	cytosol	23.2	55.6
Os02t0227400-01	Rice	extracellular	50.72	46.23
Os06t0319600-01	Rice	cytosol	9.53	41.09
HORVU2Hr1G105500.3	Barley	cytosol	34.35	34.48
Os07t0688500-00	Rice	cytosol	28.06	29.77
Os03t0313300-01	Rice	mitochondrion	26.26	26.74
Os06t0558700-01	Rice	nucleus	8.81	14.89

Protein Annotations

Gene3D:1.10.1410.10	EntrezGene:107275815	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	ProteinID:BAS90722.1
ProteinID:CAE04327.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004652	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006378	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631
GO:GO:0046872	InterPro:NuclTrfase_I-like_C	EnsemblPlantsGene:Os04g0588350	EnsemblPlants:Os04t0588350-00	PFAM:PF01909	PFAM:PF04926
PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF26	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	UniProt:Q7XN15	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
TMHMM:TMhelix	UniParc:UPI00004BA145	RefSeq:XP_015635369.1	SEG:seg	:	:

Description

Similar to nucleotidyltransferase family protein. (Os04t0588350-00)

Coordinates

chr4:+:29730813..29732483

Molecular Weight (calculated)

61370.4 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.277

Length

556 amino acids

Sequence
(BLAST)

001: MASQSPQSRG VAEPISLVGP TPADLESTAR LERLLREEGL YESAEETAAR EEVLRGLRGV VDRWVKRLTR QRGYPDGMAD RATALVLPFG SYRLGVHGRG
101: SDIDALVVGP SYVDCDRDFF GALATALAET AAVAELQPVP GAHVPVIKMR FHGVQVDLVY AGVCLPVVPG DLDLSGRSVL RGLDLATARS LNGVRVADEI
201: LRLVPDATAF RTTLRCVKHW AKARGVYSNV AGFLGGVGWA ILVACVCLLY PNASPSMLLP RFFRVFARWK WPSPVMLRAI EHDDGELGLS LPVWDPRRNP
301: RDKIHLMPIV TPAYPCMNSG YNVSHATLRV ITEQLAVGDA VCQEIVKAGS GGGGWDKLFQ PFNFFGAYKS YLQVDVTVTG GEEDDLREWK GWVESRLRLL
401: SARVEADTSG MLLCHLHPQP YAAEPHNEPR RRRRTSSFFV GLSKPPAQPQ QQQHQLFDLR ATTEGFKEEV YMYDYWRPGM EVAVAHVRRK DLPSYVLRQL
501: LRSPGRHDQL KRKRADDDPS SSPAASDHSA SSSSSRDAKR PAAAPGRIGS SFEKKT

Best Arabidopsis Sequence Match ( AT2G25850.4 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGARSES LQNEMMSSRR LSLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.