Factsheet for TraesCS2B01G473300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	mitochondrion, nucleus, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G473400.1	Wheat	plastid	62.46	96.16
TraesCS2D01G451500.1	Wheat	nucleus	92.88	95.26
TraesCS2A01G451800.1	Wheat	nucleus	91.99	94.69
TraesCSU01G155200.1	Wheat	nucleus	91.28	94.3
TraesCS2A01G451700.1	Wheat	nucleus	91.28	94.3
HORVU4Hr1G013750.2	Barley	nucleus	89.32	90.29
TraesCS2B01G340000.1	Wheat	nucleus	72.06	77.0
Os04t0588350-00	Rice	nucleus, plastid	69.57	70.32
KXG27007	Sorghum	nucleus	64.41	66.3
Os01t0702900-01	Rice	extracellular	15.12	65.89
Zm00001d002505_P001	Maize	nucleus	61.74	62.86
HORVU2Hr1G105500.3	Barley	cytosol	41.81	42.42
TraesCS7B01G270600.4	Wheat	nucleus	52.31	40.55
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	48.04	38.52
TraesCS4B01G068100.1	Wheat	nucleus	44.48	34.29
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	25.62	27.12
TraesCS4B01G180500.1	Wheat	nucleus	25.09	26.11

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PIRSF:PIRSF018425	PANTHER:PTHR10682	PANTHER:PTHR10682:SF26	InterPro:PolA_pol_RNA-bd_dom
InterPro:PolA_pol_cen_dom	InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631
EnsemblPlantsGene:TraesCS2B01G473300	EnsemblPlants:TraesCS2B01G473300.1	TIGR:cd05402	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:670173547..670175235

Molecular Weight (calculated)

62201.0 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.186

Length

562 amino acids

Sequence
(BLAST)

001: MSFTLQHKNN LAIMMLTPIS LVGPTPADHE SSSQLEILLR EAGLYETSDE LAAREDVLRD LQAIVDRWVK RVTAQRGFPD GMAEQATALL IPFGSYRLGV
101: HGRGSDIDAL VVGPSYIDRD HDFFAVLGGV LAETEAVTEL QPVPRAHVPV IKMRFHGVQV DLLYASVCLP VVPRDLDLRD RSVFRGMDLA SARSLNGVRV
201: ADELLRLVPD AGAFRTTLRC IKHWAKARGV YSNVMGFLGG VGWAILVARV CQLYPNASPS MLVPRFFKIF SQWKWPNPVL LRDIEHDDGG ELALRLPVWD
301: PRRNPRDKSH IMPVITPAYP CMNSCYNVSH ATLRTITEQL QIGNGICQEI LKAGPGGAGG WDALFQPFQF FKAYKSYLQV DVKVAGGEAD LREWKGWVES
401: RLRQLVNRVE VATAGMLLCH PNPKAYAGKP HDLHCTSTFF VGLSKPQPQQ QQPQVPFDLR ATTDGFKQEV YTYEFWRPGM ELEVSHTRRK DLPSYVLDQI
501: LPAGHLKRRR AAESNSSPPL SSAPGDVKKV AAAGGTGSAP ERKRRCCPSS NILPSASVQG VA

Best Arabidopsis Sequence Match ( AT2G25850.1 )
(BLAST)

001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA

Arabidopsis Description

PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.