Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G342300.1 | Wheat | nucleus | 96.2 | 96.2 |
| TraesCS2D01G320700.1 | Wheat | nucleus | 96.2 | 95.11 |
| HORVU2Hr1G079870.2 | Barley | nucleus | 94.11 | 91.84 |
| TraesCS2B01G473300.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 77.0 | 72.06 |
| Os04t0588350-00 | Rice | nucleus, plastid | 73.38 | 69.42 |
| TraesCS2B01G473400.1 | Wheat | plastid | 48.1 | 69.32 |
| KXG27007 | Sorghum | nucleus | 67.68 | 65.2 |
| Zm00001d002505_P001 | Maize | nucleus | 64.83 | 61.78 |
| Os01t0702900-01 | Rice | extracellular | 15.02 | 61.24 |
| TraesCS7B01G270600.4 | Wheat | nucleus | 55.13 | 40.0 |
| TraesCS6B01G219800.3 | Wheat | cytosol, mitochondrion | 51.33 | 38.52 |
| TraesCS4B01G068100.1 | Wheat | nucleus | 46.96 | 33.88 |
| TraesCS2B01G112000.1 | Wheat | cytosol, plasma membrane, plastid | 27.0 | 26.74 |
| TraesCS4B01G180500.1 | Wheat | nucleus | 26.81 | 26.11 |
Protein Annotations
| Gene3D:1.10.1410.10 | MapMan:16.2.1.1.1 | Gene3D:3.30.460.10 | Gene3D:3.30.70.590 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004652 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | GO:GO:0031123 | GO:GO:0043631 | InterPro:NuclTrfase_I-like_C | PFAM:PF01909 |
| PFAM:PF04926 | PFAM:PF04928 | PIRSF:PIRSF018425 | PANTHER:PTHR10682 | PANTHER:PTHR10682:SF26 | InterPro:PolA_pol_RNA-bd_dom |
| InterPro:PolA_pol_cen_dom | InterPro:PolyA_polymerase | InterPro:Polymerase_NTP_transf_dom | SUPFAM:SSF55003 | SUPFAM:SSF81301 | SUPFAM:SSF81631 |
| EnsemblPlantsGene:TraesCS2B01G340000 | EnsemblPlants:TraesCS2B01G340000.1 | TIGR:cd05402 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:+:485432961..485434541
Molecular Weight (calculated)
58842.4 Da
IEP (calculated)
7.087
GRAVY (calculated)
-0.290
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPIFLVGP TPADHESTTQ LEKHLCEAGL HESAEETAAR EDVLRDLQGI VDRWVKRLTA QREYPDGMAE HATALLLPFG SYRLGVHGRG SDIDALVVGP
101: AYVDRHHDFF DVLGGVLAET EAVTELQLVP GAYVPVIKMR FRGVQVDLLY ASVCLPAVPS DLDLRGRSVL RGLDMATVRS LNGVRVADEI MRLVPDAGAF
201: RTTLRCVKHW AEARGIYSNA MGFVGGVGWA ILVARVCQLY PNAAPSMLVP RFFRIFSQWK WPSPVMLRDI EHDDDGGEMP LGLPVWDPRR NPRDGSHLMP
301: VITPAYPCMN SCYNVSRATL RTMTAEFEAA HKVCQEIAVA GAWDALFRPF NFFKAYKSYL RVDVKVAGGE EDLREWKGWV ESRLRQLVVR VEMATAGILL
401: CHPHPHAYAA KPHDDDRRRS SSFFVGLSKP APSPQQQQQP PQFDLRLTTQ EFKDEVYTYA FWRPGMELDV SHTRRKDLPP YVLEQILSTD RLKRKRPDDD
501: SGKSESSPVK RAAAAGRIGS SPESET
101: AYVDRHHDFF DVLGGVLAET EAVTELQLVP GAYVPVIKMR FRGVQVDLLY ASVCLPAVPS DLDLRGRSVL RGLDMATVRS LNGVRVADEI MRLVPDAGAF
201: RTTLRCVKHW AEARGIYSNA MGFVGGVGWA ILVARVCQLY PNAAPSMLVP RFFRIFSQWK WPSPVMLRDI EHDDDGGEMP LGLPVWDPRR NPRDGSHLMP
301: VITPAYPCMN SCYNVSRATL RTMTAEFEAA HKVCQEIAVA GAWDALFRPF NFFKAYKSYL RVDVKVAGGE EDLREWKGWV ESRLRQLVVR VEMATAGILL
401: CHPHPHAYAA KPHDDDRRRS SSFFVGLSKP APSPQQQQQP PQFDLRLTTQ EFKDEVYTYA FWRPGMELDV SHTRRKDLPP YVLEQILSTD RLKRKRPDDD
501: SGKSESSPVK RAAAAGRIGS SPESET
001: MVSTQQRTDD DSSQPVKASL KSYGITEPLS IAGPSAADVK RNLELEKFLV DEGLYESKEE TMRREEVVVR IDQIVKHWVK QLTRQRGYTD QMVEDANAVI
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA
101: FTFGSYRLGV HGPMADIDTL CVGPSYVNRE EDFFIFFRDI LAEMEEVTEL QPVTDAHVPV MKFKFQGISI DLLYASISLL VIPQDLDISN SSVLCDVDEQ
201: TVRSLNGCRV ADQILKLVPN SEHFRTTLRC LKYWAKKRGV YSNVTGFLGG VNWALLVARL CQFYPNAIPS MLVSRFFRVY TQWRWPNPVM LCAIEEDDLS
301: FPVWDPRKNH RDRYHLMPII TPAYPCMNSS YNVSQSTLRV MTEQFQFGNT ICQEIELNKQ HWSSLFQQYM FFEAYKNYLQ VDVLAADAED LLAWKGWVES
401: RFRQLTLKIE RDTNGMLMCH PQPNEYVDTS KQFRHCAFFM GLQRADGFGG QECQQFDIRG TVDEFRQEVN MYMFWRPGMD VHVSHVRRRQ LPSFVFPNGY
501: KRSRQSRHQS QQCREPGDEG VGSLSDSVER YAKRKNDDEI MNSRPEKREK RASCSLHTLD AASPDSSGIT TSGTPQIGIV PGPRAECLVT GDLVCNVTSL
601: PNVEVEAEKF ISKITELRKF SQYEHTSGSE QILEVDSRAL VQSYHDLAEP VAKHVRPDLS ALLACEGGQN KEIGHDMGSE SINDTDTQHL PRRLNVNEDV
701: DEVEREAKLG EIAGGVLWNG HCGRNLDHEG FVTPANLDSA VENRNLHSDG LFKSGLPEEL QSNSLLSGTG KLDDGASSRR LSLKSVA
Arabidopsis Description
PAPS2PAPS2 [Source:UniProtKB/TrEMBL;Acc:A0A178VXR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.