Factsheet for TraesCS7B01G270600.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G365600.4	Wheat	nucleus	98.62	98.48
HORVU7Hr1G088370.13	Barley	nucleus	97.66	97.52
TraesCS7A01G357100.1	Wheat	nucleus	96.55	95.89
OQU76574	Sorghum	nucleus	79.17	82.59
Zm00001d036977_P001	Maize	nucleus	77.24	79.77
Bra011388.1-P	Field mustard	nucleus	39.17	67.94
Zm00001d046255_P035	Maize	nucleus	77.1	67.76
PGSC0003DMT400075574	Potato	nucleus	54.62	65.35
Solyc12g095890.1.1	Tomato	nucleus	54.07	64.58
GSMUA_Achr10P...	Banana	nucleus	61.24	63.88
GSMUA_Achr6P14860_001	Banana	nucleus	56.28	60.53
VIT_11s0016g03040.t01	Wine grape	nucleus	48.83	59.2
KRH52804	Soybean	nucleus	58.76	58.2
KRH62113	Soybean	nucleus	58.34	58.1
CDX68897	Canola	nucleus	57.66	57.66
CDX75292	Canola	nucleus	57.93	57.61
TraesCS6B01G219800.3	Wheat	cytosol, mitochondrion	55.03	56.92
GSMUA_Achr9P16270_001	Banana	nucleus	60.97	55.25
TraesCS2B01G340000.1	Wheat	nucleus	40.0	55.13
CDX77017	Canola	nucleus	56.97	54.99
CDY35331	Canola	nucleus	57.1	54.33
AT4G32850.8	Thale cress	nucleus	57.1	54.12
Solyc08g066200.2.1	Tomato	nucleus	58.21	53.62
Bra034276.1-P	Field mustard	cytosol	56.83	53.44
TraesCS2B01G473300.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.55	52.31
AT2G25850.2	Thale cress	nucleus	57.38	52.0
TraesCS2B01G473400.1	Wheat	plastid	25.24	50.14
TraesCS4B01G068100.1	Wheat	nucleus	45.1	44.86
TraesCS2B01G112000.1	Wheat	cytosol, plasma membrane, plastid	22.34	30.51
TraesCS4B01G180500.1	Wheat	nucleus	21.52	28.89

Protein Annotations

Gene3D:1.10.1410.10	MapMan:16.2.1.1.1	Gene3D:3.30.460.10	Gene3D:3.30.70.590	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004652	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0031123	GO:GO:0043631	InterPro:NuclTrfase_I-like_C	PFAM:PF01909
PFAM:PF04926	PFAM:PF04928	PANTHER:PTHR10682	PANTHER:PTHR10682:SF29	InterPro:PolA_pol_RNA-bd_dom	InterPro:PolA_pol_cen_dom
InterPro:PolyA_polymerase	InterPro:Polymerase_NTP_transf_dom	SUPFAM:SSF55003	SUPFAM:SSF81301	SUPFAM:SSF81631	EnsemblPlantsGene:TraesCS7B01G270600
EnsemblPlants:TraesCS7B01G270600.4	TIGR:cd05402	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7B:+:496272022..496276685

Molecular Weight (calculated)

80820.7 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.392

Length

725 amino acids

Sequence
(BLAST)

001: MATSNKPISL AGPLDADVQR TAELNKFLVE AGLYESADES ARREEVLGEL DKIVKDWVKQ LTSQRGYTDQ MVEEANAVLF TFGSYRLGVH GPGADIDTLC
101: VGPSYVNREE DFFIVLHDIL AQTEEVTQLQ PVPDAHVPVM KFKFHGISID LLYASVSLLV VPSDLDISQE AVLYDIDEAT VRSLTGCRVA DQILRLVPNI
201: ESFRTTLRCL KHWARRRGVY SNVTGFLGGV NWALLVARVC QLYPNAVPSM LVSRFFRVFT QWRWPTPVML CAIEEEELGF PVWDPRKNPR DRTHHMPIIT
301: PAYPCMNSSY NVSTSTLRVM IEQFQFGNKI CQEIEMNKAS WSALFEPFNF FEAYKNYLQV DIIAEDDEDL RLWKGWVESR LRQLTLKIER DTYGKLQCHP
401: YPYEYADPSR QCAHCAFFMG LSRKEGVKIQ EGQQFDIRGT VDEFRHEINM YMFWKPGMEL AVSHVRRKEI PAYVFPEGYK RPRPQRHVNH QHQSDKNDPG
501: NGSPDSQLKR KHDSTGIDTE PSRSVKRASV SPVHPKTSSP RSGNVSDEPI SNNQQKVTSN ASGGSQDSPG SGNRDQTKCS SSSHASEKSL DSVASGSKCV
601: KIEAVCSGDV TSKHVDCISP VKDSTAPTVA VSTTLKRVAE KVVLELVGSE SIGGNKAELL QIAETDMGNV LVENLHFGGN GVSQSGLPEE LELNNGIEVL
701: SKAHAGLKSD GSQKLSLRVS LTSTA

Best Arabidopsis Sequence Match ( AT4G32850.5 )
(BLAST)

001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLS LKSTV

Arabidopsis Description

nPAPnuclear poly(a) polymerase [Source:TAIR;Acc:AT4G32850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.